BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.7 nTPM
HPA:35.7 nTPM
GTEx:44.5 nTPM
FANTOM5:32.8 Scaled Tags Per Million
Pig:5.7 nTPM

CAUDATE - Antibody stainingi
Antibody HPA040125
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.1
2288 Male, age 75, left hemisphere 15.5
2846 Female, age 79, unknown 11.7
2481 Female, age 94, left hemisphere 10.5
2289 Male, age 61, right hemisphere 10.2
2290 Female, age 72, unknown 10.0
1854 Male, age 80, left hemisphere 9.1
1781 Male, age 74, unknown 7.7
1857 Female, age 85, left hemisphere 6.3
Claustrum
nTPM: 15.7
2292 Female, age 85, both hemispheres 30.1
1956 Male, age 74, unknown 18.7
2491 Male, age 75, both hemispheres 16.8
2568 Male, age 61, both hemispheres 13.5
2196 Female, age 79, unknown 13.0
2645 Female, age 72, unknown 12.8
2392 Female, age 94, both hemispheres 12.6
2284 Female, age 91, both hemispheres 12.2
2198 Male, age 80, both hemispheres 11.6
Globus pallidus, externus
nTPM: 35.7
2567 Female, age 72, unknown 62.3
2646 Male, age 61, right hemisphere 42.8
1996 Male, age 80, right hemisphere 30.5
2772 Female, age 79, unknown 24.8
2395 Male, age 75, both hemispheres 18.0
Globus pallidus, internus
nTPM: 34.5
2111 Female, age 85, right hemisphere 60.3
2566 Female, age 72, unknown 47.0
2778 Female, age 91, both hemispheres 31.2
2287 Male, age 75, right hemisphere 28.3
2037 Male, age 80, right hemisphere 27.1
1818 Male, age 74, unknown 26.3
2483 Female, age 94, right hemisphere 21.4
Nucleus accumbens
nTPM: 12.3
2391 Female, age 94, left hemisphere 16.9
2698 Female, age 72, unknown 15.8
2732 Male, age 80, right hemisphere 15.7
2286 Male, age 75, left hemisphere 14.3
2824 Male, age 61, right hemisphere 11.3
1783 Male, age 74, unknown 9.5
1806 Female, age 85, left hemisphere 9.1
1856 Female, age 91, right hemisphere 5.9
Nucleus basalis of Meynert
nTPM: 20.1
2569 Male, age 61, both hemispheres 39.2
2821 Male, age 75, both hemispheres 15.5
2484 Female, age 94, left hemisphere 14.5
2393 Male, age 80, right hemisphere 11.2
Nucleus of the diagonal band
nTPM: 6.1
1812 Female, age 91, both hemispheres 7.0
1979 Male, age 74, unknown 6.3
2029 Male, age 61, right hemisphere 6.3
2195 Female, age 85, both hemispheres 5.5
2775 Male, age 80, right hemisphere 5.4
Olfactory tubercle
nTPM: 6.4
2856 Male, age 75, right hemisphere 7.3
2487 Female, age 94, left hemisphere 7.1
1998 Female, age 91, both hemispheres 6.0
1846 Male, age 80, right hemisphere 5.4
Putamen
nTPM: 14.7
2647 Male, age 75, left hemisphere 26.2
2489 Female, age 72, unknown 22.4
1829 Male, age 74, unknown 15.5
2482 Female, age 94, left hemisphere 12.2
2466 Female, age 79, unknown 11.1
1937 Female, age 91, right hemisphere 9.5
1838 Male, age 80, right hemisphere 6.0
Septal nuclei
nTPM: 7.0
2394 Male, age 61, left hemisphere 12.2
2199 Male, age 80, right hemisphere 11.0
2059 Female, age 85, both hemispheres 7.8
2629 Female, age 94, right hemisphere 5.2
2009 Female, age 91, both hemispheres 4.7
2031 Female, age 72, unknown 4.5
1960 Male, age 74, unknown 3.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.0
Samples: 246

Max nTPM: 89.9
Min nTPM: 4.7
Std nTPM: 14.7
Median nTPM: 27.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 89.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 78.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 74.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 68.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 66.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 66.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 66.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 62.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 60.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 59.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 58.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.4
Samples: 246

Max nTPM: 104.2
Min nTPM: 2.6
Std nTPM: 13.7
Median nTPM: 14.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 104.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 83.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 81.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 74.9
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 61.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 56.0
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 53.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 49.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 47.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 47.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 46.5
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Brain - Putamen (basal ganglia)
Average nTPM: 44.5
Samples: 205

Max nTPM: 129.5
Min nTPM: 9.1
Std nTPM: 19.3
Median nTPM: 41.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 129.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 114.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 106.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 100.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 96.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 86.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 84.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 82.2
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 81.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 77.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 73.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.6
FF:10164-103B2 76 years, female 16.6
Globus pallidus
Scaled Tags Per Million: 32.8
FF:10161-103A8 76 years, female 38.1
FF:10175-103C4 60 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 21.7
FF:10037-101F1 23-56 years, mixed 21.7
Putamen
Scaled Tags Per Million: 12.2
FF:10176-103C5 60 years, female 12.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Caudate
nTPM: 5.0
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 4.4
Sample C Male 5.7
Sample D Male 6.4
Putamen
nTPM: 5.8
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.5
Sample A Female 6.5
Sample B Female 4.6
Sample C Male 4.5
Sample D Male 7.4
Septum
nTPM: 2.6
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.9
Sample A Female 2.9
Sample B Female 3.2
Sample C Male 1.9
Sample D Male 2.2
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 5.4
Sample C Male 3.3
Sample D Male 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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