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General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
6
Cytoband
q25.3
Chromosome location (bp)
158765741 - 158819368
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
EZR-201
EZR-202
EZR-203
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Mutated cancer genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II] GO:0001650 [fibrillar center] GO:0001726 [ruffle] GO:0001772 [immunological synapse] GO:0001931 [uropod] GO:0001951 [intestinal D-glucose absorption] GO:0003376 [sphingosine-1-phosphate receptor signaling pathway] GO:0003723 [RNA binding] GO:0003779 [actin binding] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0005737 [cytoplasm] GO:0005768 [endosome] GO:0005829 [cytosol] GO:0005856 [cytoskeleton] GO:0005884 [actin filament] GO:0005886 [plasma membrane] GO:0005902 [microvillus] GO:0005903 [brush border] GO:0005925 [focal adhesion] GO:0005938 [cell cortex] GO:0007159 [leukocyte cell-cell adhesion] GO:0007411 [axon guidance] GO:0008017 [microtubule binding] GO:0008022 [protein C-terminus binding] GO:0008092 [cytoskeletal protein binding] GO:0008360 [regulation of cell shape] GO:0010628 [positive regulation of gene expression] GO:0010737 [protein kinase A signaling] GO:0015629 [actin cytoskeleton] GO:0016020 [membrane] GO:0016323 [basolateral plasma membrane] GO:0016324 [apical plasma membrane] GO:0019898 [extrinsic component of membrane] GO:0019904 [protein domain specific binding] GO:0022614 [membrane to membrane docking] GO:0030033 [microvillus assembly] GO:0030175 [filopodium] GO:0030315 [T-tubule] GO:0030855 [epithelial cell differentiation] GO:0030863 [cortical cytoskeleton] GO:0030953 [astral microtubule organization] GO:0031528 [microvillus membrane] GO:0031532 [actin cytoskeleton reorganization] GO:0031623 [receptor internalization] GO:0031982 [vesicle] GO:0032532 [regulation of microvillus length] GO:0032587 [ruffle membrane] GO:0032703 [negative regulation of interleukin-2 production] GO:0032991 [protein-containing complex] GO:0034236 [protein kinase A catalytic subunit binding] GO:0034237 [protein kinase A regulatory subunit binding] GO:0034629 [cellular protein-containing complex localization] GO:0035088 [establishment or maintenance of apical/basal cell polarity] GO:0036064 [ciliary basal body] GO:0040018 [positive regulation of multicellular organism growth] GO:0042802 [identical protein binding] GO:0042995 [cell projection] GO:0043622 [cortical microtubule organization] GO:0044297 [cell body] GO:0044393 [microspike] GO:0044548 [S100 protein binding] GO:0044853 [plasma membrane raft] GO:0044877 [protein-containing complex binding] GO:0045121 [membrane raft] GO:0045177 [apical part of cell] GO:0045296 [cadherin binding] GO:0046847 [filopodium assembly] GO:0048015 [phosphatidylinositol-mediated signaling] GO:0048471 [perinuclear region of cytoplasm] GO:0050714 [positive regulation of protein secretion] GO:0050839 [cell adhesion molecule binding] GO:0050860 [negative regulation of T cell receptor signaling pathway] GO:0051015 [actin filament binding] GO:0051017 [actin filament bundle assembly] GO:0051018 [protein kinase A binding] GO:0051117 [ATPase binding] GO:0051286 [cell tip] GO:0051660 [establishment of centrosome localization] GO:0061028 [establishment of endothelial barrier] GO:0070062 [extracellular exosome] GO:0070373 [negative regulation of ERK1 and ERK2 cascade] GO:0071320 [cellular response to cAMP] GO:0071944 [cell periphery] GO:0072659 [protein localization to plasma membrane] GO:0072697 [protein localization to cell cortex] GO:0097449 [astrocyte projection] GO:0097454 [Schwann cell microvillus] GO:0097718 [disordered domain specific binding] GO:0098592 [cytoplasmic side of apical plasma membrane] GO:1902115 [regulation of organelle assembly] GO:1902896 [terminal web assembly] GO:1902966 [positive regulation of protein localization to early endosome] GO:1903078 [positive regulation of protein localization to plasma membrane] GO:1903364 [positive regulation of cellular protein catabolic process] GO:1903753 [negative regulation of p38MAPK cascade] GO:2000643 [positive regulation of early endosome to late endosome transport]
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Cancer-related genes Candidate cancer biomarkers Mutated cancer genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II] GO:0001650 [fibrillar center] GO:0001726 [ruffle] GO:0001772 [immunological synapse] GO:0003376 [sphingosine-1-phosphate receptor signaling pathway] GO:0003723 [RNA binding] GO:0003779 [actin binding] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0005737 [cytoplasm] GO:0005768 [endosome] GO:0005829 [cytosol] GO:0005856 [cytoskeleton] GO:0005884 [actin filament] GO:0005886 [plasma membrane] GO:0005902 [microvillus] GO:0005903 [brush border] GO:0005925 [focal adhesion] GO:0005938 [cell cortex] GO:0007159 [leukocyte cell-cell adhesion] GO:0007411 [axon guidance] GO:0008017 [microtubule binding] GO:0008092 [cytoskeletal protein binding] GO:0008360 [regulation of cell shape] GO:0010628 [positive regulation of gene expression] GO:0010737 [protein kinase A signaling] GO:0015629 [actin cytoskeleton] GO:0016020 [membrane] GO:0016323 [basolateral plasma membrane] GO:0016324 [apical plasma membrane] GO:0019898 [extrinsic component of membrane] GO:0019904 [protein domain specific binding] GO:0022614 [membrane to membrane docking] GO:0030033 [microvillus assembly] GO:0030175 [filopodium] GO:0030863 [cortical cytoskeleton] GO:0030953 [astral microtubule organization] GO:0031528 [microvillus membrane] GO:0031532 [actin cytoskeleton reorganization] GO:0031982 [vesicle] GO:0032587 [ruffle membrane] GO:0032703 [negative regulation of interleukin-2 production] GO:0032991 [protein-containing complex] GO:0034236 [protein kinase A catalytic subunit binding] GO:0034237 [protein kinase A regulatory subunit binding] GO:0034629 [cellular protein-containing complex localization] GO:0042802 [identical protein binding] GO:0042995 [cell projection] GO:0043622 [cortical microtubule organization] GO:0044548 [S100 protein binding] GO:0044853 [plasma membrane raft] GO:0045177 [apical part of cell] GO:0045296 [cadherin binding] GO:0046847 [filopodium assembly] GO:0048015 [phosphatidylinositol-mediated signaling] GO:0048471 [perinuclear region of cytoplasm] GO:0050714 [positive regulation of protein secretion] GO:0050839 [cell adhesion molecule binding] GO:0050860 [negative regulation of T cell receptor signaling pathway] GO:0051015 [actin filament binding] GO:0051017 [actin filament bundle assembly] GO:0051018 [protein kinase A binding] GO:0051117 [ATPase binding] GO:0051660 [establishment of centrosome localization] GO:0061028 [establishment of endothelial barrier] GO:0070062 [extracellular exosome] GO:0070373 [negative regulation of ERK1 and ERK2 cascade] GO:0071320 [cellular response to cAMP] GO:0071944 [cell periphery] GO:0072659 [protein localization to plasma membrane] GO:0072697 [protein localization to cell cortex] GO:0098592 [cytoplasmic side of apical plasma membrane] GO:1902115 [regulation of organelle assembly] GO:1902966 [positive regulation of protein localization to early endosome] GO:1903364 [positive regulation of cellular protein catabolic process] GO:1903753 [negative regulation of p38MAPK cascade] GO:2000643 [positive regulation of early endosome to late endosome transport]
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Cancer-related genes Mutated cancer genes COSMIC somatic mutations in cancer genes COSMIC Somatic Mutations COSMIC Translocations Protein evidence (Ezkurdia et al 2014)