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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:109.2 nTPM
HPA:109.2 nTPM
GTEx:164.4 nTPM
FANTOM5:87.1 Scaled Tags Per Million
Pig:126.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 109.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 106.8
1981 Female, age 72, midline 120.6
2048 Male, age 55, midline 104.1
2194 Female, age 79, both hemispheres 104.0
2816 Male, age 47, midline 103.8
2565 Male, age 75, midline 101.5
Cervical spinal cord, dorsal horn
nTPM: 109.2
2296 Male, age 66, both hemispheres 137.3
2173 Female, age 72, unknown 121.7
2069 Male, age 47, both hemispheres 110.9
1877 Male, age 55, unknown 99.4
2721 Male, age 90, both hemispheres 94.0
2297 Male, age 75, both hemispheres 92.0
Cervical spinal cord, ventral horn
nTPM: 102.5
2098 Female, age 72, unknown 127.4
2068 Male, age 55, unknown 104.5
2809 Male, age 90, both hemispheres 100.5
2295 Male, age 66, both hemispheres 97.5
2480 Male, age 75, both hemispheres 93.1
2820 Female, age 79, both hemispheres 91.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 164.4
Samples: 159

Max nTPM: 287.6
Min nTPM: 77.6
Std nTPM: 36.3
Median nTPM: 165.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 287.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 266.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 247.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 243.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 243.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 225.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 224.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 219.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 218.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 216.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 215.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 212.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 211.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 211.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 211.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 204.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 204.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 203.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 202.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 202.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 202.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 201.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 200.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 200.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 199.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 198.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 198.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 197.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 196.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 194.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 193.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 191.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 190.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 190.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 189.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 189.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 189.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 188.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 188.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 188.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 188.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 187.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 187.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 186.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 185.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 184.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 184.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 184.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 183.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 183.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 182.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 182.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 179.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 179.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 179.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 178.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 177.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 177.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 177.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 176.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 176.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 176.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 175.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 173.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 172.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 172.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 172.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 171.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 170.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 170.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 169.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 169.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 168.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 168.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 168.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 168.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 167.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 167.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 166.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 165.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 164.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 164.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 164.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 164.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 163.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 162.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 162.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 162.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 161.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 161.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 161.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 159.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 159.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 159.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 157.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 157.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 157.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 155.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 154.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 154.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 153.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 152.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 152.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 151.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 151.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 151.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 150.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 150.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 149.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 148.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 147.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 146.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 145.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 144.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 144.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 143.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 143.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 141.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 140.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 134.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 134.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 133.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 132.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 131.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 131.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 130.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 129.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 129.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 127.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 127.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 127.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 127.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 126.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 125.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 125.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 125.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 124.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 124.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 123.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 119.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 118.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 117.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 116.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 116.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 113.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 112.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 110.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 106.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 102.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 95.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 95.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 88.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 87.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 85.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 78.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 77.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 87.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 87.1
FF:10181-103D1 60 years, female 87.2
FF:10159-103A6 76 years, female 86.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 101.7
Samples: 4

Max nTPM: 113.7
Min nTPM: 89.7
Sample A Female 98.0
Sample B Female 89.7
Sample C Male 113.7
Sample D Male 105.4
Ventral spinal cord
nTPM: 126.6
Samples: 4

Max nTPM: 141.2
Min nTPM: 111.5
Sample A Female 128.3
Sample B Female 125.4
Sample C Male 141.2
Sample D Male 111.5

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