BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.3 nTPM
HPA:16.3 nTPM
GTEx:10.6 nTPM
FANTOM5:13.8 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:1.5 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA010866
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.1
2481 Female, age 94, left hemisphere 16.4
2289 Male, age 61, right hemisphere 14.6
2288 Male, age 75, left hemisphere 12.9
1854 Male, age 80, left hemisphere 12.4
1857 Female, age 85, left hemisphere 12.4
1781 Male, age 74, unknown 12.2
2290 Female, age 72, unknown 12.1
2846 Female, age 79, unknown 12.0
Claustrum
nTPM: 12.2
1956 Male, age 74, unknown 13.8
2292 Female, age 85, both hemispheres 13.4
2196 Female, age 79, unknown 12.9
2491 Male, age 75, both hemispheres 12.7
2392 Female, age 94, both hemispheres 11.8
2198 Male, age 80, both hemispheres 11.6
2568 Male, age 61, both hemispheres 11.4
2284 Female, age 91, both hemispheres 11.3
2645 Female, age 72, unknown 10.5
Globus pallidus, externus
nTPM: 16.3
2772 Female, age 79, unknown 19.5
1996 Male, age 80, right hemisphere 19.0
2646 Male, age 61, right hemisphere 15.3
2395 Male, age 75, both hemispheres 14.7
2567 Female, age 72, unknown 13.0
Globus pallidus, internus
nTPM: 15.8
2037 Male, age 80, right hemisphere 17.2
2778 Female, age 91, both hemispheres 16.7
2287 Male, age 75, right hemisphere 16.5
2111 Female, age 85, right hemisphere 15.9
1818 Male, age 74, unknown 15.3
2566 Female, age 72, unknown 14.8
2483 Female, age 94, right hemisphere 14.5
Nucleus accumbens
nTPM: 12.8
2732 Male, age 80, right hemisphere 15.5
2391 Female, age 94, left hemisphere 14.7
2698 Female, age 72, unknown 13.1
1806 Female, age 85, left hemisphere 12.5
2286 Male, age 75, left hemisphere 12.4
1856 Female, age 91, right hemisphere 11.5
2824 Male, age 61, right hemisphere 11.5
1783 Male, age 74, unknown 10.9
Nucleus basalis of Meynert
nTPM: 13.7
2569 Male, age 61, both hemispheres 16.0
2484 Female, age 94, left hemisphere 13.7
2821 Male, age 75, both hemispheres 12.6
2393 Male, age 80, right hemisphere 12.4
Nucleus of the diagonal band
nTPM: 11.4
1812 Female, age 91, both hemispheres 12.0
1979 Male, age 74, unknown 11.7
2029 Male, age 61, right hemisphere 11.3
2775 Male, age 80, right hemisphere 11.0
2195 Female, age 85, both hemispheres 10.7
Olfactory tubercle
nTPM: 11.6
1846 Male, age 80, right hemisphere 12.3
2856 Male, age 75, right hemisphere 11.8
1998 Female, age 91, both hemispheres 11.1
2487 Female, age 94, left hemisphere 11.1
Putamen
nTPM: 12.1
2482 Female, age 94, left hemisphere 15.3
1937 Female, age 91, right hemisphere 12.2
1829 Male, age 74, unknown 11.8
2489 Female, age 72, unknown 11.7
2466 Female, age 79, unknown 11.4
2647 Male, age 75, left hemisphere 11.3
1838 Male, age 80, right hemisphere 11.0
Septal nuclei
nTPM: 12.3
2394 Male, age 61, left hemisphere 14.2
2199 Male, age 80, right hemisphere 13.5
2009 Female, age 91, both hemispheres 13.1
2629 Female, age 94, right hemisphere 12.6
2059 Female, age 85, both hemispheres 11.7
2031 Female, age 72, unknown 11.0
1960 Male, age 74, unknown 10.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.6
Samples: 246

Max nTPM: 45.1
Min nTPM: 2.5
Std nTPM: 6.0
Median nTPM: 9.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 45.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 43.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 34.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 34.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 30.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 30.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 29.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 24.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 24.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 22.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 22.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.3
Samples: 246

Max nTPM: 50.2
Min nTPM: 2.5
Std nTPM: 5.6
Median nTPM: 7.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 50.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 27.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 25.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 24.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 24.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 24.5
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 22.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 21.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 20.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 20.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 20.1
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Brain - Putamen (basal ganglia)
Average nTPM: 10.6
Samples: 205

Max nTPM: 38.0
Min nTPM: 3.8
Std nTPM: 4.7
Median nTPM: 9.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 38.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 24.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 23.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 23.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 23.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 22.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 21.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 20.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 20.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 19.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 18.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.5
FF:10164-103B2 76 years, female 11.5
Globus pallidus
Scaled Tags Per Million: 13.8
FF:10161-103A8 76 years, female 17.5
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 10.2
FF:10037-101F1 23-56 years, mixed 10.2
Putamen
Scaled Tags Per Million: 6.5
FF:10176-103C5 60 years, female 6.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Caudate
nTPM: 6.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.6
Sample A Female 7.5
Sample B Female 4.6
Sample C Male 5.8
Sample D Male 6.4
Putamen
nTPM: 7.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 5.5
Sample A Female 10.5
Sample B Female 5.5
Sample C Male 6.6
Sample D Male 6.1
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.4
Sample A Female 6.5
Sample B Female 4.4
Sample C Male 6.3
Sample D Male 8.0
Ventral pallidum
nTPM: 6.2
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.1
Sample A Female 6.6
Sample B Female 5.1
Sample C Male 7.3
Sample D Male 5.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.7
Sample A Male 1.1
Sample B Male 0.7
Sample C Female 0.9
Sample D Female 0.8
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.2
Sample A Male 1.2
Sample B Male 1.7
Sample C Female 1.6
Sample D Female 1.6
Ventral forebrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.3
Sample A Male 1.3
Sample B Male 1.3
Sample C Female 1.3
Sample D Female 1.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68410333 Antisense, RP_041214_01_F10, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.4
68410333 Antisense, RP_041214_01_F10, Mouse strain C57BL/6J (56 days, male) 0.4

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