MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.9 nTPM
HPA:21.9 nTPM
GTEx:56.2 nTPM
FANTOM5:133.7 Scaled Tags Per Million
Pig:89.1 nTPM
Mouse:74.8 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.9
2586 Male, age 75, left hemisphere 23.4
2828 Female, age 72, unknown 19.6
2019 Male, age 18, unknown 19.5
2219 Male, age 76, both hemispheres 19.1
1870 Female, age 42, unknown 18.7
1833 Male, age 53, unknown 18.5
2666 Male, age 74, left hemisphere 18.4
2411 Female, age 72, unknown 18.2
1830 Male, age 51, unknown 17.4
1827 Male, age 72, unknown 16.9
Dorsal raphe nucleus
nTPM: 15.7
2750 Male, age 76, both hemispheres 19.6
1828 Male, age 53, unknown 16.6
2047 Male, age 72, unknown 14.6
2298 Female, age 72, unknown 14.0
2016 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 16.8
1890 Male, age 53, unknown 18.3
2849 Male, age 72, unknown 16.9
1848 Female, age 42, unknown 16.5
2097 Female, age 72, unknown 15.7
Median raphe nucleus
nTPM: 18.5
2220 Male, age 76, midline 18.5
Pedunculopontine tegmental nucleus
nTPM: 15.1
2334 Male, age 80, both hemispheres 18.8
1921 Female, age 85, both hemispheres 16.0
2338 Male, age 61, both hemispheres 10.4
Periaquaductal grey, anterior
nTPM: 19.9
2502 Female, age 75, unknown 21.4
1947 Male, age 18, unknown 20.9
1795 Male, age 51, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 15.3
1840 Male, age 53, unknown 15.9
2850 Male, age 76, both hemispheres 15.3
1831 Male, age 72, unknown 15.2
2464 Female, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 14.4
2140 Male, age 76, both hemispheres 15.5
2272 Male, age 74, both hemispheres 14.4
2053 Male, age 18, unknown 13.2
Pretectal area
nTPM: 18.7
2007 Male, age 72, unknown 24.7
1817 Female, age 42, unknown 23.5
1816 Male, age 51, unknown 23.3
1815 Male, age 53, unknown 22.8
1944 Female, age 72, unknown 20.8
2407 Male, age 75, both hemispheres 17.7
2667 Female, age 75, unknown 15.6
2825 Male, age 18, unknown 15.1
2273 Male, age 74, both hemispheres 14.4
2224 Female, age 72, unknown 14.1
2316 Male, age 76, right hemisphere 13.4
Red nucleus
nTPM: 21.9
2503 Female, age 72, unknown 27.7
1821 Female, age 72, unknown 24.6
2785 Male, age 18, unknown 23.3
2588 Male, age 74, left hemisphere 23.2
2584 Male, age 75, left hemisphere 23.0
2769 Male, age 72, unknown 22.7
2725 Female, age 75, unknown 22.0
2227 Male, age 72, unknown 21.2
1904 Male, age 53, unknown 20.8
1865 Male, age 51, unknown 20.0
1954 Female, age 42, unknown 17.9
2823 Male, age 76, right hemisphere 16.5
Substantia nigra
nTPM: 18.8
1889 Female, age 72, unknown 21.0
1916 Female, age 42, unknown 20.8
2409 Female, age 72, unknown 20.4
2665 Male, age 74, both hemispheres 20.2
1851 Male, age 51, unknown 20.1
2241 Male, age 72, unknown 18.9
2699 Male, age 18, unknown 17.8
2583 Male, age 75, right hemisphere 16.6
2590 Female, age 75, unknown 16.6
1941 Male, age 53, unknown 15.1
Superior colliculus
nTPM: 18.0
2668 Female, age 75, unknown 21.6
2261 Male, age 18, unknown 20.8
1913 Female, age 42, unknown 19.4
1796 Male, age 53, unknown 18.6
2587 Male, age 74, left hemisphere 18.2
1839 Male, age 51, unknown 18.1
2087 Female, age 72, unknown 16.8
2664 Male, age 75, both hemispheres 16.7
1895 Male, age 76, right hemisphere 15.1
1995 Male, age 72, unknown 15.1
Ventral tegmental area
nTPM: 17.9
2410 Female, age 72, unknown 20.7
2218 Male, age 76, both hemispheres 18.5
2223 Female, age 72, unknown 18.3
1942 Male, age 51, unknown 17.6
1915 Female, age 42, unknown 17.0
2021 Male, age 53, unknown 15.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.2
Samples: 139

Max nTPM: 94.9
Min nTPM: 36.1
Std nTPM: 10.7
Median nTPM: 55.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 94.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 86.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 84.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 84.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 77.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 77.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 76.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 76.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 75.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 74.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 73.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 133.7
FF:10158-103A5 76 years, female 133.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.1
Pig sample Sample description nTPM
Midbrain
nTPM: 89.1
Samples: 4

Max nTPM: 100.2
Min nTPM: 80.1
Sample A Female 89.6
Sample B Female 80.1
Sample C Male 100.2
Sample D Male 86.4
Periaqueductal gray
nTPM: 76.4
Samples: 3

Max nTPM: 79.8
Min nTPM: 74.4
Sample B Female 74.4
Sample C Male 79.8
Sample D Male 74.9
Substantia nigra
nTPM: 77.8
Samples: 4

Max nTPM: 86.6
Min nTPM: 70.4
Sample A Female 79.5
Sample B Female 70.4
Sample C Male 86.6
Sample D Male 74.6
Superior colliculi
nTPM: 86.0
Samples: 4

Max nTPM: 94.0
Min nTPM: 67.3
Sample A Female 89.1
Sample B Female 67.3
Sample C Male 93.4
Sample D Male 94.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 77.3
Min nTPM: 70.8
Sample A Male 70.8
Sample B Male 76.5
Sample C Female 77.3
Sample D Female 74.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
71281111 Antisense, RP_050818_02_B04, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.