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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.7 nTPM
HPA:46.7 nTPM
GTEx:55.2 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:37.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 46.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 34.0
1981 Female, age 72, midline 42.2
2048 Male, age 55, midline 34.8
2194 Female, age 79, both hemispheres 32.3
2816 Male, age 47, midline 30.9
2565 Male, age 75, midline 30.0
Cervical spinal cord, dorsal horn
nTPM: 36.1
2173 Female, age 72, unknown 45.0
2069 Male, age 47, both hemispheres 44.3
1877 Male, age 55, unknown 40.6
2721 Male, age 90, both hemispheres 33.8
2297 Male, age 75, both hemispheres 27.3
2296 Male, age 66, both hemispheres 25.4
Cervical spinal cord, ventral horn
nTPM: 46.7
2098 Female, age 72, unknown 66.6
2295 Male, age 66, both hemispheres 57.6
2809 Male, age 90, both hemispheres 55.0
2068 Male, age 55, unknown 37.5
2480 Male, age 75, both hemispheres 33.8
2820 Female, age 79, both hemispheres 29.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.2
Samples: 159

Max nTPM: 368.7
Min nTPM: 4.3
Std nTPM: 49.8
Median nTPM: 41.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 368.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 292.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 278.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 194.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 160.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 160.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 138.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 138.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 129.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 122.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 122.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 115.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 113.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 110.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 105.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 100.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 100.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 98.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 97.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 96.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 96.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 94.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 93.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 93.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 93.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 92.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 89.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 85.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 85.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 81.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 81.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 81.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 79.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 79.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 74.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 72.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 72.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 68.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 68.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 67.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 61.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 60.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 60.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 58.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 58.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 57.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 57.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 56.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 56.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 56.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 56.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 53.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 53.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 53.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 51.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 50.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 50.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 49.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 49.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 48.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 48.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 46.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 46.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 46.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 44.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 44.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 44.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 44.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 43.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 43.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 43.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 43.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 41.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 41.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 41.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 41.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 41.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 41.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 40.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 40.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 39.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 39.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 39.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 38.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 38.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 38.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 37.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 37.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 36.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 36.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 36.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 36.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 35.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 35.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 34.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 34.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 34.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 33.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 32.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 32.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 31.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 31.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 31.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 31.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 30.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 30.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 29.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 29.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 29.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 28.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 28.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 28.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 28.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 27.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 27.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 26.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 26.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 26.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 26.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 26.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 24.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 23.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 23.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 23.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 23.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 22.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 21.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 21.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 21.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 21.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 20.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 20.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 19.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 19.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 18.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 18.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 17.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 17.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 16.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 15.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 15.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 15.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 14.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 14.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 11.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 11.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 11.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 10.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 9.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 9.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 9.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 9.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 8.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 8.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 7.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 4.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 45.6
FF:10159-103A6 76 years, female 63.2
FF:10181-103D1 60 years, female 28.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 32.1
Samples: 4

Max nTPM: 40.5
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 40.5
Sample C Male 28.5
Sample D Male 34.4
Ventral spinal cord
nTPM: 37.6
Samples: 4

Max nTPM: 44.5
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 41.0
Sample C Male 32.9
Sample D Male 44.5

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