HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:76.4 nTPM
HPA:76.4 nTPM
GTEx:73.9 nTPM
FANTOM5:336.3 Scaled Tags Per Million
Pig:53.9 nTPM
Mouse:21.9 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 76.4
Sample id Sample description nTPM
Hippocampus
nTPM: 76.4
2529 Female, age 94, left hemisphere 78.0
1898 Male, age 80, left hemisphere 77.6
1911 Female, age 85, right hemisphere 77.1
1855 Male, age 76, left hemisphere 76.1
2621 Female, age 67, right hemisphere 75.6
2148 Female, age 91, left hemisphere 74.2
Dentate gyrus
nTPM: 75.9
2530 Female, age 94, left hemisphere 81.6
2010 Male, age 76, both hemispheres 79.2
2246 Female, age 85, both hemispheres 75.0
2531 Female, age 67, both hemispheres 73.5
1927 Female, age 91, both hemispheres 73.2
2528 Male, age 74, both hemispheres 72.8
Entorhinal gyrus
nTPM: 75.8
2686 Male, age 75, right hemisphere 82.4
2117 Female, age 91, right hemisphere 78.1
1938 Female, age 85, left hemisphere 75.3
1787 Male, age 76, left hemisphere 73.9
2764 Male, age 80, right hemisphere 73.1
2613 Female, age 94, left hemisphere 72.3
Hippocampus, CA1
nTPM: 75.4
1873 Female, age 85, both hemispheres 77.4
2749 Male, age 80, left hemisphere 77.3
2045 Male, age 76, both hemispheres 75.7
2527 Male, age 74, both hemispheres 73.5
2082 Female, age 91, right hemisphere 73.1
Hippocampus, CA2
nTPM: 74.6
1892 Male, age 76, both hemispheres 77.6
2113 Female, age 91, right hemisphere 75.0
2249 Male, age 74, both hemispheres 74.7
2437 Female, age 94, left hemisphere 73.8
1963 Male, age 80, left hemisphere 73.5
1940 Female, age 85, left hemisphere 73.3
Hippocampus, CA3
nTPM: 74.4
1867 Male, age 76, both hemispheres 78.6
1891 Female, age 85, both hemispheres 78.1
2137 Male, age 80, left hemisphere 76.0
2861 Female, age 67, both hemispheres 74.9
2620 Female, age 94, left hemisphere 69.6
2436 Male, age 74, both hemispheres 69.0
Parahippocampal cortex
nTPM: 75.0
1850 Male, age 80, both hemispheres 77.6
2532 Female, age 72, left hemisphere 76.8
2245 Female, age 91, both hemispheres 76.6
2018 Male, age 76, both hemispheres 75.4
2693 Female, age 94, both hemispheres 74.9
1990 Female, age 91, right hemisphere 74.8
2692 Male, age 74, both hemispheres 74.1
1933 Female, age 85, both hemispheres 73.5
2622 Female, age 67, right hemisphere 73.4
2250 Female, age 67, right hemisphere 73.2
Perirhinal gyrus
nTPM: 73.7
2848 Male, age 76, right hemisphere 77.0
1841 Female, age 85, right hemisphere 76.3
1847 Female, age 91, left hemisphere 73.6
1794 Male, age 80, right hemisphere 71.7
2521 Female, age 94, right hemisphere 70.0
Subiculum
nTPM: 75.2
2042 Male, age 76, both hemispheres 77.6
1901 Male, age 80, both hemispheres 76.9
1977 Female, age 85, both hemispheres 76.7
2729 Female, age 91, right hemisphere 75.1
2438 Female, age 94, left hemisphere 72.9
2619 Male, age 74, both hemispheres 71.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 73.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 73.9
Samples: 197

Max nTPM: 146.0
Min nTPM: 31.2
Std nTPM: 19.4
Median nTPM: 69.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 146.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 141.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 141.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 138.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 119.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 118.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 114.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 112.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 112.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 111.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 111.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 336.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 336.3
FF:10169-103B7 60 years, female 365.1
FF:10153-102I9 76 years, female 307.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 53.9
Samples: 4

Max nTPM: 62.1
Min nTPM: 43.7
Sample A Female 61.8
Sample B Female 43.7
Sample C Male 62.1
Sample D Male 47.9
Entorhinal cortex
nTPM: 46.5
Samples: 4

Max nTPM: 48.7
Min nTPM: 42.0
Sample A Female 46.9
Sample B Female 48.7
Sample C Male 42.0
Sample D Male 48.5
Subiculum
nTPM: 50.4
Samples: 4

Max nTPM: 60.5
Min nTPM: 44.8
Sample A Female 60.5
Sample B Female 47.6
Sample C Male 44.8
Sample D Male 48.7
Ventral hippocampus
nTPM: 48.1
Samples: 4

Max nTPM: 54.2
Min nTPM: 45.9
Sample A Female 45.9
Sample B Female 46.2
Sample C Male 46.0
Sample D Male 54.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 19.7
Sample A Male 19.7
Sample B Male 23.4
Sample C Female 21.8
Sample D Female 22.8
Hippocampal formation
nTPM: 21.7
Samples: 4

Max nTPM: 23.8
Min nTPM: 19.5
Sample A Male 23.8
Sample B Male 19.5
Sample C Female 23.2
Sample D Female 20.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
70608547 Antisense, RP_050630_01_E07, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.