MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.7 nTPM
HPA:83.7 nTPM
GTEx:85.5 nTPM
FANTOM5:373.0 Scaled Tags Per Million
Pig:66.7 nTPM
Mouse:26.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.8
2666 Male, age 74, left hemisphere 86.1
1870 Female, age 42, unknown 85.2
1830 Male, age 51, unknown 81.6
1833 Male, age 53, unknown 81.3
2219 Male, age 76, both hemispheres 80.0
2828 Female, age 72, unknown 79.7
2411 Female, age 72, unknown 79.4
2019 Male, age 18, unknown 78.8
1827 Male, age 72, unknown 78.2
2586 Male, age 75, left hemisphere 78.0
Dorsal raphe nucleus
nTPM: 78.6
1828 Male, age 53, unknown 80.1
2016 Female, age 72, unknown 79.4
2750 Male, age 76, both hemispheres 78.3
2298 Female, age 72, unknown 77.8
2047 Male, age 72, unknown 77.4
Inferior colliculus
nTPM: 80.5
2849 Male, age 72, unknown 84.3
1890 Male, age 53, unknown 80.4
1848 Female, age 42, unknown 79.4
2097 Female, age 72, unknown 78.0
Median raphe nucleus
nTPM: 80.1
2220 Male, age 76, midline 80.1
Pedunculopontine tegmental nucleus
nTPM: 77.5
2334 Male, age 80, both hemispheres 80.2
2338 Male, age 61, both hemispheres 76.7
1921 Female, age 85, both hemispheres 75.7
Periaquaductal grey, anterior
nTPM: 77.9
2502 Female, age 75, unknown 81.3
1947 Male, age 18, unknown 76.7
1795 Male, age 51, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 83.3
2850 Male, age 76, both hemispheres 87.7
2464 Female, age 72, unknown 83.7
1840 Male, age 53, unknown 81.5
1831 Male, age 72, unknown 80.3
Periaquaductal grey, lateral
nTPM: 77.3
2053 Male, age 18, unknown 80.0
2140 Male, age 76, both hemispheres 80.0
2272 Male, age 74, both hemispheres 72.0
Pretectal area
nTPM: 78.6
1815 Male, age 53, unknown 80.8
2825 Male, age 18, unknown 80.8
1817 Female, age 42, unknown 80.3
2007 Male, age 72, unknown 78.9
2224 Female, age 72, unknown 78.8
2316 Male, age 76, right hemisphere 78.4
1816 Male, age 51, unknown 78.2
2407 Male, age 75, both hemispheres 78.0
1944 Female, age 72, unknown 77.6
2273 Male, age 74, both hemispheres 76.5
2667 Female, age 75, unknown 76.3
Red nucleus
nTPM: 83.7
2503 Female, age 72, unknown 88.9
1821 Female, age 72, unknown 86.4
1865 Male, age 51, unknown 85.8
2725 Female, age 75, unknown 84.5
1954 Female, age 42, unknown 84.2
2769 Male, age 72, unknown 84.0
1904 Male, age 53, unknown 83.5
2227 Male, age 72, unknown 82.4
2588 Male, age 74, left hemisphere 81.8
2584 Male, age 75, left hemisphere 81.5
2823 Male, age 76, right hemisphere 81.4
2785 Male, age 18, unknown 79.8
Substantia nigra
nTPM: 78.9
2699 Male, age 18, unknown 82.6
2665 Male, age 74, both hemispheres 82.0
1889 Female, age 72, unknown 79.8
2241 Male, age 72, unknown 78.6
1941 Male, age 53, unknown 78.4
2590 Female, age 75, unknown 78.3
2409 Female, age 72, unknown 78.2
1851 Male, age 51, unknown 78.1
2583 Male, age 75, right hemisphere 77.3
1916 Female, age 42, unknown 75.4
Superior colliculus
nTPM: 80.1
1995 Male, age 72, unknown 83.9
1913 Female, age 42, unknown 83.5
2587 Male, age 74, left hemisphere 82.4
1895 Male, age 76, right hemisphere 80.5
1839 Male, age 51, unknown 80.2
2087 Female, age 72, unknown 79.1
2668 Female, age 75, unknown 78.7
1796 Male, age 53, unknown 77.8
2664 Male, age 75, both hemispheres 77.7
2261 Male, age 18, unknown 77.5
Ventral tegmental area
nTPM: 78.7
2223 Female, age 72, unknown 82.4
1942 Male, age 51, unknown 79.1
2021 Male, age 53, unknown 78.3
2410 Female, age 72, unknown 77.6
1915 Female, age 42, unknown 77.3
2218 Male, age 76, both hemispheres 77.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.5
Samples: 139

Max nTPM: 205.3
Min nTPM: 39.1
Std nTPM: 28.3
Median nTPM: 78.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 205.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 179.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 171.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 153.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 145.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 142.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 141.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 139.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 139.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 138.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 135.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 373.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 373.0
FF:10158-103A5 76 years, female 373.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.7
Pig sample Sample description nTPM
Midbrain
nTPM: 66.7
Samples: 4

Max nTPM: 100.1
Min nTPM: 47.7
Sample A Female 100.1
Sample B Female 67.3
Sample C Male 51.6
Sample D Male 47.7
Periaqueductal gray
nTPM: 62.9
Samples: 3

Max nTPM: 65.3
Min nTPM: 61.0
Sample B Female 62.3
Sample C Male 65.3
Sample D Male 61.0
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 71.1
Min nTPM: 54.8
Sample A Female 57.0
Sample B Female 54.8
Sample C Male 61.7
Sample D Male 71.1
Superior colliculi
nTPM: 53.9
Samples: 4

Max nTPM: 65.1
Min nTPM: 38.6
Sample A Female 56.7
Sample B Female 38.6
Sample C Male 55.3
Sample D Male 65.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 28.1
Min nTPM: 24.2
Sample A Male 26.3
Sample B Male 26.5
Sample C Female 28.1
Sample D Female 24.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70608547 Antisense, RP_050630_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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