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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:76.4 nTPM
GTEx:108.0 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:76.6 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 76.4
Sample id Sample description nTPM
Substantia nigra
nTPM: 76.4
1916 Female, age 42, unknown 116.9
2665 Male, age 74, both hemispheres 101.0
1941 Male, age 53, unknown 88.7
1851 Male, age 51, unknown 88.0
1889 Female, age 72, unknown 75.7
2409 Female, age 72, unknown 74.3
2241 Male, age 72, unknown 65.5
2699 Male, age 18, unknown 58.1
2590 Female, age 75, unknown 50.4
2583 Male, age 75, right hemisphere 45.4

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.0
Samples: 139

Max nTPM: 449.8
Min nTPM: 14.6
Std nTPM: 91.4
Median nTPM: 75.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 449.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 449.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 373.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 358.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 305.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 298.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 290.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 286.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 280.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 270.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 251.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 246.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 238.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 234.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 229.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 223.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 223.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 216.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 216.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 215.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 213.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 210.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 206.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 204.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 191.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 182.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 181.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 177.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 177.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 164.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 159.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 158.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 157.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 154.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 149.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 147.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 147.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 141.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 140.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 140.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 140.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 135.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 135.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 134.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 134.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 132.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 129.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 127.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 126.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 126.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 124.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 122.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 117.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 111.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 110.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 104.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 101.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 100.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 100.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 99.3
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 99.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 92.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 90.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 89.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 87.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 81.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 80.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 80.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 78.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 75.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 75.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 74.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 72.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 70.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 69.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 68.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 65.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 62.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 61.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 60.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 60.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 58.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 57.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 55.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 54.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 52.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 50.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 50.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 48.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 47.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 44.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 43.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 43.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 40.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 39.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 39.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 38.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 37.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 37.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 36.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 36.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 35.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 34.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 34.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 33.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 32.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 32.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 31.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 30.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 30.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 29.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 28.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 28.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 28.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 27.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 26.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 26.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 25.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 24.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 24.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 23.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 22.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 22.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 21.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 21.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 20.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 20.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 17.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 14.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.6
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.6
Samples: 4

Max nTPM: 125.9
Min nTPM: 15.8
Sample A Female 125.9
Sample B Female 49.7
Sample C Male 115.1
Sample D Male 15.8

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