MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA:21.2 nTPM
GTEx:18.6 nTPM
FANTOM5:29.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.5
1827 Male, age 72, unknown 21.2
1870 Female, age 42, unknown 19.8
2219 Male, age 76, both hemispheres 19.3
2666 Male, age 74, left hemisphere 19.2
2828 Female, age 72, unknown 19.0
1830 Male, age 51, unknown 18.4
2411 Female, age 72, unknown 18.2
1833 Male, age 53, unknown 17.8
2019 Male, age 18, unknown 17.8
2586 Male, age 75, left hemisphere 14.7
Dorsal raphe nucleus
nTPM: 18.0
2047 Male, age 72, unknown 18.9
2750 Male, age 76, both hemispheres 18.9
1828 Male, age 53, unknown 18.2
2298 Female, age 72, unknown 17.4
2016 Female, age 72, unknown 16.8
Inferior colliculus
nTPM: 18.3
1848 Female, age 42, unknown 19.1
2097 Female, age 72, unknown 18.5
2849 Male, age 72, unknown 18.1
1890 Male, age 53, unknown 17.5
Median raphe nucleus
nTPM: 21.0
2220 Male, age 76, midline 21.0
Pedunculopontine tegmental nucleus
nTPM: 21.2
2338 Male, age 61, both hemispheres 23.2
2334 Male, age 80, both hemispheres 20.4
1921 Female, age 85, both hemispheres 19.9
Periaquaductal grey, anterior
nTPM: 18.9
1947 Male, age 18, unknown 21.1
1795 Male, age 51, unknown 18.6
2502 Female, age 75, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 17.2
2464 Female, age 72, unknown 18.1
1840 Male, age 53, unknown 17.0
1831 Male, age 72, unknown 16.9
2850 Male, age 76, both hemispheres 16.7
Periaquaductal grey, lateral
nTPM: 17.2
2053 Male, age 18, unknown 18.0
2140 Male, age 76, both hemispheres 16.7
2272 Male, age 74, both hemispheres 16.7
Pretectal area
nTPM: 18.9
1816 Male, age 51, unknown 21.3
1944 Female, age 72, unknown 20.1
1815 Male, age 53, unknown 19.8
1817 Female, age 42, unknown 19.8
2007 Male, age 72, unknown 19.8
2667 Female, age 75, unknown 18.9
2825 Male, age 18, unknown 18.5
2316 Male, age 76, right hemisphere 17.7
2407 Male, age 75, both hemispheres 17.7
2273 Male, age 74, both hemispheres 17.3
2224 Female, age 72, unknown 17.1
Red nucleus
nTPM: 18.7
2503 Female, age 72, unknown 20.0
1821 Female, age 72, unknown 19.8
2725 Female, age 75, unknown 19.8
1954 Female, age 42, unknown 19.7
1865 Male, age 51, unknown 19.0
1904 Male, age 53, unknown 18.9
2588 Male, age 74, left hemisphere 18.8
2823 Male, age 76, right hemisphere 18.6
2769 Male, age 72, unknown 18.0
2227 Male, age 72, unknown 17.8
2785 Male, age 18, unknown 17.4
2584 Male, age 75, left hemisphere 17.2
Substantia nigra
nTPM: 19.3
2409 Female, age 72, unknown 20.6
1916 Female, age 42, unknown 20.5
1941 Male, age 53, unknown 20.3
2590 Female, age 75, unknown 20.0
1889 Female, age 72, unknown 19.8
2241 Male, age 72, unknown 19.3
2665 Male, age 74, both hemispheres 18.9
1851 Male, age 51, unknown 18.8
2583 Male, age 75, right hemisphere 18.2
2699 Male, age 18, unknown 17.0
Superior colliculus
nTPM: 18.9
1895 Male, age 76, right hemisphere 21.2
2261 Male, age 18, unknown 20.7
1796 Male, age 53, unknown 20.1
2587 Male, age 74, left hemisphere 19.2
2087 Female, age 72, unknown 19.1
1913 Female, age 42, unknown 18.8
2668 Female, age 75, unknown 18.8
1839 Male, age 51, unknown 18.5
1995 Male, age 72, unknown 16.7
2664 Male, age 75, both hemispheres 15.4
Ventral tegmental area
nTPM: 18.4
2218 Male, age 76, both hemispheres 19.9
1915 Female, age 42, unknown 19.4
2223 Female, age 72, unknown 19.0
2410 Female, age 72, unknown 18.5
1942 Male, age 51, unknown 17.0
2021 Male, age 53, unknown 16.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 139

Max nTPM: 33.5
Min nTPM: 12.4
Std nTPM: 3.4
Median nTPM: 17.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 33.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 29.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 28.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 24.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 23.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 23.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.7
FF:10158-103A5 76 years, female 29.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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