MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:104.3 nTPM
HPA:104.3 nTPM
GTEx:100.3 nTPM
FANTOM5:143.4 Scaled Tags Per Million
Pig:69.4 nTPM
Mouse:129.0 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.2
2666 Male, age 74, left hemisphere 112.6
2019 Male, age 18, unknown 104.8
1827 Male, age 72, unknown 104.1
2411 Female, age 72, unknown 98.6
2828 Female, age 72, unknown 95.8
1870 Female, age 42, unknown 94.6
2219 Male, age 76, both hemispheres 93.2
1833 Male, age 53, unknown 90.0
2586 Male, age 75, left hemisphere 89.1
1830 Male, age 51, unknown 88.9
Dorsal raphe nucleus
nTPM: 99.4
2298 Female, age 72, unknown 115.5
2750 Male, age 76, both hemispheres 100.8
2047 Male, age 72, unknown 96.7
1828 Male, age 53, unknown 95.5
2016 Female, age 72, unknown 88.5
Inferior colliculus
nTPM: 92.2
2097 Female, age 72, unknown 104.2
1848 Female, age 42, unknown 89.6
1890 Male, age 53, unknown 88.4
2849 Male, age 72, unknown 86.8
Median raphe nucleus
nTPM: 99.1
2220 Male, age 76, midline 99.1
Pedunculopontine tegmental nucleus
nTPM: 100.7
2334 Male, age 80, both hemispheres 105.9
1921 Female, age 85, both hemispheres 101.0
2338 Male, age 61, both hemispheres 95.1
Periaquaductal grey, anterior
nTPM: 96.8
1795 Male, age 51, unknown 103.9
1947 Male, age 18, unknown 99.0
2502 Female, age 75, unknown 87.6
Periaquaductal grey, dorsal
nTPM: 89.0
1831 Male, age 72, unknown 89.8
2464 Female, age 72, unknown 89.6
1840 Male, age 53, unknown 89.1
2850 Male, age 76, both hemispheres 87.6
Periaquaductal grey, lateral
nTPM: 92.7
2272 Male, age 74, both hemispheres 104.3
2053 Male, age 18, unknown 88.5
2140 Male, age 76, both hemispheres 85.2
Pretectal area
nTPM: 104.3
1816 Male, age 51, unknown 117.6
2007 Male, age 72, unknown 116.2
1817 Female, age 42, unknown 115.5
1944 Female, age 72, unknown 111.5
1815 Male, age 53, unknown 110.5
2667 Female, age 75, unknown 104.7
2224 Female, age 72, unknown 103.7
2273 Male, age 74, both hemispheres 101.3
2825 Male, age 18, unknown 90.7
2407 Male, age 75, both hemispheres 88.1
2316 Male, age 76, right hemisphere 87.4
Red nucleus
nTPM: 92.6
2785 Male, age 18, unknown 98.9
1821 Female, age 72, unknown 98.1
2503 Female, age 72, unknown 96.7
1865 Male, age 51, unknown 94.4
1904 Male, age 53, unknown 94.1
1954 Female, age 42, unknown 91.9
2823 Male, age 76, right hemisphere 91.9
2769 Male, age 72, unknown 91.2
2227 Male, age 72, unknown 90.8
2725 Female, age 75, unknown 90.3
2584 Male, age 75, left hemisphere 86.6
2588 Male, age 74, left hemisphere 86.0
Substantia nigra
nTPM: 100.0
1916 Female, age 42, unknown 116.0
1889 Female, age 72, unknown 109.6
1851 Male, age 51, unknown 108.3
1941 Male, age 53, unknown 102.5
2241 Male, age 72, unknown 98.7
2665 Male, age 74, both hemispheres 97.1
2583 Male, age 75, right hemisphere 95.3
2409 Female, age 72, unknown 91.9
2699 Male, age 18, unknown 91.8
2590 Female, age 75, unknown 88.3
Superior colliculus
nTPM: 99.0
2668 Female, age 75, unknown 127.1
1796 Male, age 53, unknown 107.3
2261 Male, age 18, unknown 105.5
2087 Female, age 72, unknown 104.4
1913 Female, age 42, unknown 98.9
2587 Male, age 74, left hemisphere 93.8
1895 Male, age 76, right hemisphere 93.2
1995 Male, age 72, unknown 91.3
1839 Male, age 51, unknown 87.2
2664 Male, age 75, both hemispheres 81.0
Ventral tegmental area
nTPM: 100.7
2410 Female, age 72, unknown 114.0
2218 Male, age 76, both hemispheres 107.5
1915 Female, age 42, unknown 101.1
2223 Female, age 72, unknown 95.4
2021 Male, age 53, unknown 94.4
1942 Male, age 51, unknown 91.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.3
Samples: 139

Max nTPM: 179.8
Min nTPM: 59.1
Std nTPM: 26.0
Median nTPM: 94.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 179.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 178.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 176.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 169.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 168.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 168.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 159.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 154.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 151.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 145.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 142.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.4
FF:10158-103A5 76 years, female 143.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.4
Pig sample Sample description nTPM
Midbrain
nTPM: 67.9
Samples: 4

Max nTPM: 73.7
Min nTPM: 63.5
Sample A Female 70.1
Sample B Female 63.5
Sample C Male 73.7
Sample D Male 64.1
Periaqueductal gray
nTPM: 50.5
Samples: 3

Max nTPM: 59.3
Min nTPM: 45.0
Sample B Female 47.2
Sample C Male 59.3
Sample D Male 45.0
Substantia nigra
nTPM: 63.1
Samples: 4

Max nTPM: 89.5
Min nTPM: 43.4
Sample A Female 89.5
Sample B Female 50.2
Sample C Male 69.2
Sample D Male 43.4
Superior colliculi
nTPM: 69.4
Samples: 4

Max nTPM: 82.3
Min nTPM: 51.9
Sample A Female 82.3
Sample B Female 51.9
Sample C Male 79.6
Sample D Male 63.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.0
Samples: 4

Max nTPM: 131.7
Min nTPM: 125.2
Sample A Male 130.5
Sample B Male 128.6
Sample C Female 125.2
Sample D Female 131.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
393265 Antisense, RP_040809_01_B07, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.