MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.8 nTPM
HPA:74.8 nTPM
GTEx:203.2 nTPM
FANTOM5:173.0 Scaled Tags Per Million
Pig:279.6 nTPM
Mouse:178.5 nTPM
Allen mouse:14.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.2
2019 Male, age 18, unknown 90.9
2828 Female, age 72, unknown 80.4
2586 Male, age 75, left hemisphere 74.0
2219 Male, age 76, both hemispheres 68.8
1827 Male, age 72, unknown 63.4
2411 Female, age 72, unknown 62.9
2666 Male, age 74, left hemisphere 59.2
1870 Female, age 42, unknown 52.1
1833 Male, age 53, unknown 51.4
1830 Male, age 51, unknown 49.2
Dorsal raphe nucleus
nTPM: 63.8
1828 Male, age 53, unknown 77.3
2298 Female, age 72, unknown 67.3
2750 Male, age 76, both hemispheres 65.7
2047 Male, age 72, unknown 61.7
2016 Female, age 72, unknown 47.1
Inferior colliculus
nTPM: 62.2
2097 Female, age 72, unknown 77.7
1890 Male, age 53, unknown 62.5
1848 Female, age 42, unknown 57.0
2849 Male, age 72, unknown 51.6
Median raphe nucleus
nTPM: 60.2
2220 Male, age 76, midline 60.2
Pedunculopontine tegmental nucleus
nTPM: 54.3
1921 Female, age 85, both hemispheres 63.0
2334 Male, age 80, both hemispheres 59.5
2338 Male, age 61, both hemispheres 40.3
Periaquaductal grey, anterior
nTPM: 72.9
1795 Male, age 51, unknown 79.1
2502 Female, age 75, unknown 75.6
1947 Male, age 18, unknown 64.0
Periaquaductal grey, dorsal
nTPM: 46.9
2464 Female, age 72, unknown 47.9
1840 Male, age 53, unknown 47.4
1831 Male, age 72, unknown 46.7
2850 Male, age 76, both hemispheres 45.5
Periaquaductal grey, lateral
nTPM: 56.0
2272 Male, age 74, both hemispheres 71.9
2140 Male, age 76, both hemispheres 54.5
2053 Male, age 18, unknown 41.7
Pretectal area
nTPM: 74.8
2007 Male, age 72, unknown 102.5
1817 Female, age 42, unknown 96.1
1944 Female, age 72, unknown 88.2
1816 Male, age 51, unknown 84.0
2667 Female, age 75, unknown 81.0
1815 Male, age 53, unknown 74.2
2273 Male, age 74, both hemispheres 68.3
2224 Female, age 72, unknown 60.6
2316 Male, age 76, right hemisphere 59.9
2825 Male, age 18, unknown 55.3
2407 Male, age 75, both hemispheres 53.2
Red nucleus
nTPM: 69.3
2785 Male, age 18, unknown 94.3
2503 Female, age 72, unknown 78.6
2227 Male, age 72, unknown 75.1
2769 Male, age 72, unknown 74.3
2725 Female, age 75, unknown 74.0
1821 Female, age 72, unknown 68.4
1954 Female, age 42, unknown 66.6
2588 Male, age 74, left hemisphere 63.8
1865 Male, age 51, unknown 61.0
1904 Male, age 53, unknown 59.7
2584 Male, age 75, left hemisphere 59.2
2823 Male, age 76, right hemisphere 56.9
Substantia nigra
nTPM: 72.5
1916 Female, age 42, unknown 102.4
1851 Male, age 51, unknown 89.5
1941 Male, age 53, unknown 86.7
1889 Female, age 72, unknown 81.9
2665 Male, age 74, both hemispheres 68.8
2583 Male, age 75, right hemisphere 64.0
2699 Male, age 18, unknown 61.8
2590 Female, age 75, unknown 60.8
2241 Male, age 72, unknown 58.4
2409 Female, age 72, unknown 50.3
Superior colliculus
nTPM: 63.2
1796 Male, age 53, unknown 75.6
2087 Female, age 72, unknown 74.1
2261 Male, age 18, unknown 72.2
2664 Male, age 75, both hemispheres 64.4
2587 Male, age 74, left hemisphere 61.5
1839 Male, age 51, unknown 59.8
2668 Female, age 75, unknown 58.8
1995 Male, age 72, unknown 56.5
1895 Male, age 76, right hemisphere 55.4
1913 Female, age 42, unknown 53.9
Ventral tegmental area
nTPM: 71.3
1915 Female, age 42, unknown 83.3
2218 Male, age 76, both hemispheres 83.1
2410 Female, age 72, unknown 80.8
1942 Male, age 51, unknown 68.1
2223 Female, age 72, unknown 59.0
2021 Male, age 53, unknown 53.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 203.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 203.2
Samples: 139

Max nTPM: 482.8
Min nTPM: 65.7
Std nTPM: 65.1
Median nTPM: 202.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 482.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 371.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 362.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 357.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 322.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 310.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 308.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 308.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 302.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 294.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 285.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.0
FF:10158-103A5 76 years, female 173.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 279.6
Pig sample Sample description nTPM
Midbrain
nTPM: 243.0
Samples: 4

Max nTPM: 301.7
Min nTPM: 195.1
Sample A Female 250.9
Sample B Female 195.1
Sample C Male 301.7
Sample D Male 224.3
Periaqueductal gray
nTPM: 169.3
Samples: 3

Max nTPM: 182.9
Min nTPM: 151.7
Sample B Female 173.2
Sample C Male 182.9
Sample D Male 151.7
Substantia nigra
nTPM: 206.5
Samples: 4

Max nTPM: 286.9
Min nTPM: 158.3
Sample A Female 286.9
Sample B Female 170.4
Sample C Male 210.2
Sample D Male 158.3
Superior colliculi
nTPM: 279.7
Samples: 4

Max nTPM: 324.6
Min nTPM: 217.7
Sample A Female 316.4
Sample B Female 217.7
Sample C Male 324.6
Sample D Male 259.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.5
Samples: 4

Max nTPM: 213.8
Min nTPM: 152.2
Sample A Male 213.8
Sample B Male 168.0
Sample C Female 152.2
Sample D Female 180.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.5
81600110 Antisense, RP_080205_02_D02, Mouse strain C57BL/6J (56 days, male) 17.2
413792 Antisense, RP_040809_01_E02, Mouse strain C57BL/6J (56 days, male) 11.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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