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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:73.1 nTPM
HPA:73.1 nTPM
GTEx:126.3 nTPM
FANTOM5:202.3 Scaled Tags Per Million
Pig:232.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 73.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.2
2194 Female, age 79, both hemispheres 87.8
2565 Male, age 75, midline 80.3
1981 Female, age 72, midline 78.6
2816 Male, age 47, midline 55.3
2048 Male, age 55, midline 43.8
Cervical spinal cord, dorsal horn
nTPM: 68.8
2173 Female, age 72, unknown 79.0
2297 Male, age 75, both hemispheres 72.2
2069 Male, age 47, both hemispheres 71.4
2721 Male, age 90, both hemispheres 66.5
2296 Male, age 66, both hemispheres 64.9
1877 Male, age 55, unknown 58.6
Cervical spinal cord, ventral horn
nTPM: 73.1
2068 Male, age 55, unknown 85.5
2480 Male, age 75, both hemispheres 84.6
2809 Male, age 90, both hemispheres 75.6
2295 Male, age 66, both hemispheres 74.4
2820 Female, age 79, both hemispheres 72.6
2098 Female, age 72, unknown 45.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 126.3
Samples: 159

Max nTPM: 267.2
Min nTPM: 61.0
Std nTPM: 37.0
Median nTPM: 121.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 267.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 264.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 227.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 215.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 208.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 203.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 200.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 194.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 192.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 191.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 187.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 187.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 179.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 172.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 171.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 170.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 169.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 169.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 169.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 169.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 168.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 168.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 168.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 168.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 166.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 166.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 165.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 165.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 162.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 162.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 158.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 157.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 156.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 156.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 156.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 155.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 149.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 148.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 147.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 146.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 146.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 141.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 140.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 140.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 137.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 137.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 136.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 136.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 133.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 133.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 133.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 132.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 131.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 131.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 131.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 130.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 130.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 130.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 130.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 129.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 129.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 128.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 128.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 128.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 128.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 127.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 127.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 126.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 125.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 125.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 125.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 124.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 124.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 124.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 123.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 122.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 122.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 121.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 121.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 121.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 121.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 121.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 121.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 120.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 119.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 118.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 118.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 116.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 115.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 114.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 114.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 114.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 112.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 112.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 111.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 110.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 109.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 108.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 108.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 107.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 106.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 106.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 105.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 104.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 104.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 104.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 103.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 103.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 103.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 101.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 99.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 99.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 99.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 98.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 97.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 97.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 97.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 96.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 96.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 96.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 96.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 95.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 95.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 94.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 92.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 92.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 92.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 90.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 90.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 90.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 89.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 88.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 87.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 87.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 87.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 87.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 87.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 86.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 86.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 85.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 83.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 81.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 79.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 75.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 73.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 73.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 72.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 72.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 71.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 67.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 66.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 61.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 202.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 202.3
FF:10181-103D1 60 years, female 260.7
FF:10159-103A6 76 years, female 144.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 232.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 185.3
Samples: 4

Max nTPM: 195.0
Min nTPM: 162.4
Sample A Female 192.4
Sample B Female 162.4
Sample C Male 195.0
Sample D Male 191.5
Ventral spinal cord
nTPM: 232.1
Samples: 4

Max nTPM: 254.3
Min nTPM: 206.8
Sample A Female 222.0
Sample B Female 254.3
Sample C Male 245.1
Sample D Male 206.8

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