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NDUFB7
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:230.2 nTPM
HPA:230.2 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Pig:124.1 nTPM
Mouse:194.2 nTPM
Allen mouse:11.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 230.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 207.5
2032 Female, age 42, unknown 217.1
2497 Male, age 66, unknown 204.6
2396 Male, age 61, right hemisphere 200.6
Centromedial thalamic nucleus
nTPM: 201.4
2401 Male, age 76, right hemisphere 212.3
2279 Female, age 85, left hemisphere 190.4
Habenula
nTPM: 206.4
1957 Male, age 80, both hemispheres 215.8
2203 Male, age 61, left hemisphere 208.5
2276 Male, age 66, unknown 205.3
2252 Male, age 62, unknown 196.1
Lateral geniculate body
nTPM: 218.9
2035 Female, age 72, unknown 235.6
2106 Female, age 67, right hemisphere 235.4
1953 Male, age 62, unknown 225.1
2399 Male, age 61, left hemisphere 224.1
2857 Male, age 74, right hemisphere 215.3
2575 Female, age 94, right hemisphere 206.7
2659 Male, age 66, unknown 205.6
2841 Male, age 80, both hemispheres 203.3
Lateral thalamic nuclei
nTPM: 211.9
2573 Female, age 94, left hemisphere 224.5
2765 Female, age 67, both hemispheres 220.4
2661 Female, age 72, unknown 209.3
1903 Male, age 76, left hemisphere 207.4
2577 Male, age 74, both hemispheres 197.8
Medial dorsal thalamic nucleus
nTPM: 213.7
2572 Female, age 94, right hemisphere 262.4
1810 Male, age 48, unknown 222.7
2492 Male, age 75, right hemisphere 220.0
1859 Male, age 76, both hemispheres 219.5
2498 Male, age 66, unknown 214.9
1971 Male, age 61, right hemisphere 210.8
1930 Female, age 42, unknown 210.7
2576 Male, age 74, both hemispheres 207.9
2026 Male, age 62, unknown 204.1
2283 Male, age 80, right hemisphere 203.4
2402 Female, age 67, both hemispheres 201.4
2039 Female, age 72, unknown 199.9
2660 Female, age 72, unknown 199.8
Medial geniculate body
nTPM: 210.2
2650 Female, age 94, left hemisphere 231.1
2657 Male, age 74, right hemisphere 212.2
1811 Female, age 42, unknown 210.4
2207 Male, age 80, right hemisphere 209.6
2217 Female, age 72, unknown 206.5
2571 Male, age 75, right hemisphere 204.9
2049 Male, age 76, both hemispheres 196.9
Nucleus reuniens
nTPM: 206.1
2212 Female, age 67, left hemisphere 214.5
2205 Male, age 80, left hemisphere 208.8
2210 Female, age 85, left hemisphere 195.2
Nucleus rhomboideus
nTPM: 204.1
2206 Male, age 80, both hemispheres 216.2
2213 Female, age 67, left hemisphere 198.1
2280 Female, age 85, left hemisphere 198.0
Posterior thalamic nucleus
nTPM: 230.2
2649 Female, age 94, both hemispheres 292.2
2266 Male, age 76, right hemisphere 215.1
2655 Male, age 74, right hemisphere 211.5
2495 Female, age 67, right hemisphere 201.9
Pulvinar
nTPM: 216.6
1932 Male, age 80, right hemisphere 232.2
1972 Male, age 62, unknown 231.4
2398 Male, age 61, left hemisphere 218.5
2499 Male, age 66, unknown 215.9
1899 Female, age 42, unknown 215.4
2496 Female, age 67, right hemisphere 213.8
1929 Male, age 48, unknown 213.6
2724 Male, age 74, right hemisphere 213.2
2214 Male, age 76, right hemisphere 211.0
2582 Female, age 72, unknown 201.5
Subthalamic nucleus
nTPM: 213.2
2282 Male, age 61, both hemispheres 226.7
2124 Male, age 62, unknown 224.9
2658 Male, age 74, both hemispheres 223.4
2275 Male, age 66, unknown 219.9
2056 Female, age 72, unknown 213.7
2216 Male, age 48, unknown 200.2
2406 Female, age 72, unknown 198.8
2779 Female, age 42, unknown 198.3
Ventral posterolateral thalamic nucleus
nTPM: 214.9
2740 Male, age 76, right hemisphere 232.8
2570 Male, age 75, right hemisphere 218.4
2397 Male, age 61, right hemisphere 218.3
2197 Male, age 80, both hemispheres 216.6
2578 Male, age 74, both hemispheres 202.4
2581 Female, age 72, unknown 201.2
Ventral posteromedial thalamic nucleus
nTPM: 212.5
2281 Male, age 75, right hemisphere 230.3
2202 Male, age 61, left hemisphere 215.9
2758 Male, age 80, both hemispheres 215.9
2653 Male, age 74, both hemispheres 204.6
2127 Male, age 76, right hemisphere 195.9
Ventral thalamic nuclei
nTPM: 210.6
2858 Female, age 72, unknown 219.6
1845 Male, age 48, unknown 216.5
1860 Male, age 76, both hemispheres 214.4
2285 Male, age 62, unknown 212.4
2580 Male, age 66, unknown 210.4
2204 Male, age 80, both hemispheres 208.4
1912 Female, age 42, unknown 207.0
2291 Female, age 72, unknown 205.1
2652 Male, age 74, left hemisphere 202.0
Ventromedial nucleus
nTPM: 191.7
1982 Female, age 72, unknown 199.8
1822 Female, age 42, unknown 183.7
Zona incerta
nTPM: 204.7
2822 Male, age 74, right hemisphere 221.1
2215 Male, age 66, unknown 213.6
2208 Male, age 80, right hemisphere 207.9
2403 Male, age 62, unknown 193.5
2663 Female, age 72, unknown 187.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 72.9
FF:10154-103A1 76 years, female 72.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 124.1
Pig sample Sample description nTPM
Thalamus
nTPM: 124.1
Samples: 4

Max nTPM: 166.9
Min nTPM: 90.6
Sample A Female 166.9
Sample B Female 90.6
Sample C Male 148.3
Sample D Male 90.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 194.2
Samples: 4

Max nTPM: 221.8
Min nTPM: 161.9
Sample A Male 221.6
Sample B Male 161.9
Sample C Female 221.8
Sample D Female 171.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 11.9
68545312 Antisense, RP_050118_03_C01, Mouse strain C57BL/6J (56 days, male) 11.9

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