MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:221.3 nTPM
HPA:221.3 nTPM
GTEx:335.0 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:127.6 nTPM
Mouse:147.7 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 221.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 205.4
2411 Female, age 72, unknown 219.5
2019 Male, age 18, unknown 216.1
2586 Male, age 75, left hemisphere 212.8
2219 Male, age 76, both hemispheres 206.2
1827 Male, age 72, unknown 205.2
2828 Female, age 72, unknown 203.6
1870 Female, age 42, unknown 202.2
1833 Male, age 53, unknown 199.2
1830 Male, age 51, unknown 195.2
2666 Male, age 74, left hemisphere 193.8
Dorsal raphe nucleus
nTPM: 202.9
2750 Male, age 76, both hemispheres 206.8
2047 Male, age 72, unknown 206.5
1828 Male, age 53, unknown 205.7
2298 Female, age 72, unknown 203.7
2016 Female, age 72, unknown 191.6
Inferior colliculus
nTPM: 201.7
2097 Female, age 72, unknown 207.1
1890 Male, age 53, unknown 206.1
1848 Female, age 42, unknown 200.7
2849 Male, age 72, unknown 192.8
Median raphe nucleus
nTPM: 203.1
2220 Male, age 76, midline 203.1
Pedunculopontine tegmental nucleus
nTPM: 208.4
2334 Male, age 80, both hemispheres 214.6
2338 Male, age 61, both hemispheres 205.8
1921 Female, age 85, both hemispheres 204.8
Periaquaductal grey, anterior
nTPM: 204.5
1795 Male, age 51, unknown 210.2
1947 Male, age 18, unknown 205.5
2502 Female, age 75, unknown 197.8
Periaquaductal grey, dorsal
nTPM: 193.0
2464 Female, age 72, unknown 195.7
1840 Male, age 53, unknown 193.5
1831 Male, age 72, unknown 193.1
2850 Male, age 76, both hemispheres 189.5
Periaquaductal grey, lateral
nTPM: 198.1
2272 Male, age 74, both hemispheres 212.8
2053 Male, age 18, unknown 194.0
2140 Male, age 76, both hemispheres 187.3
Pretectal area
nTPM: 205.6
2007 Male, age 72, unknown 224.2
1817 Female, age 42, unknown 217.4
1816 Male, age 51, unknown 215.9
1815 Male, age 53, unknown 207.3
2273 Male, age 74, both hemispheres 206.7
1944 Female, age 72, unknown 205.6
2224 Female, age 72, unknown 203.7
2667 Female, age 75, unknown 203.6
2825 Male, age 18, unknown 197.2
2316 Male, age 76, right hemisphere 194.0
2407 Male, age 75, both hemispheres 186.0
Red nucleus
nTPM: 221.3
2503 Female, age 72, unknown 241.0
2725 Female, age 75, unknown 233.2
2588 Male, age 74, left hemisphere 226.3
2769 Male, age 72, unknown 226.3
2227 Male, age 72, unknown 224.3
1821 Female, age 72, unknown 224.0
2785 Male, age 18, unknown 220.1
1904 Male, age 53, unknown 219.6
1954 Female, age 42, unknown 219.1
1865 Male, age 51, unknown 218.2
2823 Male, age 76, right hemisphere 208.3
2584 Male, age 75, left hemisphere 195.4
Substantia nigra
nTPM: 210.9
1916 Female, age 42, unknown 238.4
1851 Male, age 51, unknown 221.6
1889 Female, age 72, unknown 218.3
1941 Male, age 53, unknown 215.5
2699 Male, age 18, unknown 207.8
2409 Female, age 72, unknown 205.0
2665 Male, age 74, both hemispheres 204.6
2583 Male, age 75, right hemisphere 201.9
2590 Female, age 75, unknown 200.7
2241 Male, age 72, unknown 195.0
Superior colliculus
nTPM: 200.9
1796 Male, age 53, unknown 211.3
2668 Female, age 75, unknown 208.3
2087 Female, age 72, unknown 207.0
2261 Male, age 18, unknown 203.0
1895 Male, age 76, right hemisphere 199.0
1913 Female, age 42, unknown 199.0
1995 Male, age 72, unknown 197.1
2587 Male, age 74, left hemisphere 196.6
1839 Male, age 51, unknown 195.6
2664 Male, age 75, both hemispheres 191.8
Ventral tegmental area
nTPM: 214.5
2410 Female, age 72, unknown 231.3
1915 Female, age 42, unknown 219.2
2218 Male, age 76, both hemispheres 219.0
2223 Female, age 72, unknown 218.3
1942 Male, age 51, unknown 205.0
2021 Male, age 53, unknown 194.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 335.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 335.0
Samples: 139

Max nTPM: 874.4
Min nTPM: 141.0
Std nTPM: 98.9
Median nTPM: 317.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 874.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 727.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 599.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 564.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 526.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 509.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 485.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 482.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 478.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 475.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 470.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 106.6
FF:10158-103A5 76 years, female 106.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.6
Pig sample Sample description nTPM
Midbrain
nTPM: 114.1
Samples: 4

Max nTPM: 137.6
Min nTPM: 93.2
Sample A Female 137.6
Sample B Female 96.6
Sample C Male 129.1
Sample D Male 93.2
Periaqueductal gray
nTPM: 73.7
Samples: 3

Max nTPM: 82.0
Min nTPM: 58.4
Sample B Female 80.6
Sample C Male 82.0
Sample D Male 58.4
Substantia nigra
nTPM: 100.0
Samples: 4

Max nTPM: 156.9
Min nTPM: 60.9
Sample A Female 156.9
Sample B Female 91.0
Sample C Male 91.0
Sample D Male 60.9
Superior colliculi
nTPM: 127.7
Samples: 4

Max nTPM: 169.5
Min nTPM: 98.7
Sample A Female 169.5
Sample B Female 108.2
Sample C Male 134.2
Sample D Male 98.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.7
Samples: 4

Max nTPM: 176.4
Min nTPM: 125.5
Sample A Male 176.4
Sample B Male 127.9
Sample C Female 125.5
Sample D Female 161.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
68545312 Antisense, RP_050118_03_C01, Mouse strain C57BL/6J (56 days, male) 9.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.