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GADD45B
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:67.9 nTPM
HPA:21.6 nTPM
GTEx:67.9 nTPM
FANTOM5:102.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA029816
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 21.6
overview
Male, age 65
Small intestine sample 232
nTPM: 11.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 22.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 22.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 29.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 67.9
Samples: 187

Max nTPM: 884.1
Min nTPM: 14.0
Std nTPM: 96.9
Median nTPM: 39.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 884.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 549.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 458.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 392.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 376.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 355.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 335.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 288.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 254.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 225.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 196.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 176.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 148.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 139.1
GTEX-1192X-2526-SM-59868 50-59 years, male 131.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 131.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 128.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 123.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 121.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 118.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 118.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 110.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 102.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 96.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 94.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 94.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 92.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 91.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 90.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 90.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 88.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 86.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 85.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 85.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 83.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 82.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 80.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 78.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 74.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 71.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 70.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 70.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 68.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 67.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 65.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 65.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 64.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 63.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 62.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 62.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 59.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 58.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 58.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 57.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 56.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 56.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 56.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 55.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 54.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 54.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 53.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 52.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 52.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 51.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 50.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 50.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 50.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 49.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 49.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 49.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 48.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 46.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 46.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 45.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 45.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 44.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 44.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 44.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 44.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 43.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 43.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 43.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 43.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 42.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 41.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 41.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 41.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 40.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 40.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 40.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 39.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 39.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 39.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 39.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 39.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 38.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 38.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 38.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 38.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 38.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 38.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 38.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 37.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 37.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 37.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 37.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 36.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 36.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 36.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 36.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 36.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 35.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 35.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 34.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 34.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 33.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 33.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 33.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 33.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 33.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 32.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 32.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 32.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 32.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 31.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 31.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 31.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 30.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 29.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 29.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 29.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 29.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 28.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 28.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 27.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 27.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 27.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 27.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 27.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 27.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 27.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 26.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 26.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 26.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 26.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 26.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 26.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 26.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 26.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 25.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 25.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 25.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 25.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 25.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 25.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 25.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 24.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 23.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 23.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 23.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 23.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 23.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 22.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 21.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 21.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 21.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 21.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 21.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 21.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 21.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 21.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 21.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 21.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 20.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 20.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 20.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 20.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 19.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 19.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 18.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 17.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 17.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 17.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 17.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 16.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 14.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 14.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 102.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 102.8
FF:10024-101D6 15,40,85 years, mixed 102.8

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