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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:158.4 nTPM
HPA:158.4 nTPM
GTEx:307.5 nTPM
FANTOM5:188.8 Scaled Tags Per Million
Pig:87.5 nTPM
Mouse:170.0 nTPM
Allen mouse:10.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 158.4
Sample id Sample description nTPM
Amygdala
nTPM: 124.7
2517 Female, age 94, left hemisphere 135.5
2514 Male, age 75, right hemisphere 129.5
2695 Female, age 67, right hemisphere 127.9
1987 Female, age 91, left hemisphere 121.6
2814 Male, age 76, right hemisphere 109.1
Basal amygdala
nTPM: 158.4
2827 Female, age 67, right hemisphere 188.9
2609 Male, age 75, right hemisphere 177.6
2685 Female, age 94, left hemisphere 161.8
2243 Female, age 91, right hemisphere 154.5
2110 Male, age 80, left hemisphere 142.9
1955 Male, age 76, both hemispheres 124.7
Central amygdala
nTPM: 141.7
2826 Female, age 94, left hemisphere 178.3
2515 Male, age 75, right hemisphere 154.2
2239 Male, age 80, left hemisphere 149.5
2701 Female, age 91, right hemisphere 121.8
1905 Male, age 76, both hemispheres 104.6
Corticomedial amygdala
nTPM: 151.0
2535 Female, age 67, right hemisphere 203.4
2829 Male, age 80, left hemisphere 165.3
2242 Female, age 91, right hemisphere 152.8
2428 Male, age 75, right hemisphere 146.8
2429 Female, age 94, left hemisphere 129.7
2240 Male, age 76, both hemispheres 108.2
Lateral amygdala
nTPM: 148.1
2256 Male, age 80, left hemisphere 167.8
2534 Female, age 94, left hemisphere 166.0
2830 Female, age 67, right hemisphere 147.9
2516 Male, age 75, right hemisphere 146.6
2255 Female, age 91, right hemisphere 145.2
1883 Male, age 76, both hemispheres 115.2
Stria terminalis, bed nucleus
nTPM: 114.9
2486 Female, age 94, both hemispheres 121.9
1974 Female, age 91, both hemispheres 118.2
2201 Male, age 74, unknown 104.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 307.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 307.5
Samples: 152

Max nTPM: 663.8
Min nTPM: 56.1
Std nTPM: 110.2
Median nTPM: 288.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 663.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 636.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 623.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 613.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 544.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 525.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 513.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 506.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 501.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 497.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 496.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 495.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 481.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 479.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 467.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 448.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 434.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 432.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 431.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 425.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 423.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 420.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 410.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 409.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 407.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 401.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 393.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 391.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 391.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 389.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 388.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 384.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 381.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 379.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 379.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 376.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 376.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 375.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 375.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 368.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 368.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 359.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 357.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 354.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 353.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 348.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 348.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 345.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 345.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 345.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 345.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 343.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 338.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 337.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 331.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 320.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 319.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 317.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 313.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 313.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 313.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 313.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 310.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 309.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 305.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 303.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 300.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 299.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 299.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 296.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 295.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 292.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 292.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 291.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 289.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 288.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 288.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 287.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 285.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 285.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 282.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 282.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 280.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 279.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 279.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 278.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 277.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 276.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 275.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 275.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 275.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 272.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 270.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 270.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 269.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 269.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 269.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 268.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 268.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 267.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 264.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 260.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 259.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 258.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 255.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 253.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 250.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 250.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 246.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 246.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 244.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 243.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 242.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 238.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 237.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 237.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 234.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 232.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 229.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 223.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 222.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 220.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 219.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 216.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 216.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 214.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 213.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 211.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 210.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 209.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 203.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 203.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 202.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 200.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 197.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 191.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 190.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 187.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 186.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 179.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 157.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 153.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 145.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 145.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 144.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 131.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 122.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 111.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 96.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 64.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 56.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 188.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 188.8
FF:10151-102I7 76 years, female 188.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87.5
Pig sample Sample description nTPM
Amygdala
nTPM: 87.5
Samples: 4

Max nTPM: 112.3
Min nTPM: 64.6
Sample A Female 112.3
Sample B Female 64.6
Sample C Male 98.0
Sample D Male 75.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 170.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 170.0
Samples: 4

Max nTPM: 203.9
Min nTPM: 147.2
Sample A Male 147.2
Sample B Male 168.9
Sample C Female 203.9
Sample D Female 160.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.5
69059956 Antisense, RP_050317_04_G04, Mouse strain C57BL/6J (56 days, male) 10.5

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