MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103.6 nTPM
HPA:103.6 nTPM
GTEx:119.6 nTPM
FANTOM5:45.9 Scaled Tags Per Million
Pig:38.5 nTPM
Mouse:34.4 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.3
2586 Male, age 75, left hemisphere 155.3
2828 Female, age 72, unknown 116.4
2666 Male, age 74, left hemisphere 98.7
1827 Male, age 72, unknown 96.8
1833 Male, age 53, unknown 92.1
1870 Female, age 42, unknown 91.4
2219 Male, age 76, both hemispheres 85.1
2411 Female, age 72, unknown 84.4
1830 Male, age 51, unknown 81.9
2019 Male, age 18, unknown 81.2
Dorsal raphe nucleus
nTPM: 91.6
2047 Male, age 72, unknown 98.4
2016 Female, age 72, unknown 96.2
1828 Male, age 53, unknown 92.0
2750 Male, age 76, both hemispheres 87.3
2298 Female, age 72, unknown 84.4
Inferior colliculus
nTPM: 91.1
2849 Male, age 72, unknown 105.4
1848 Female, age 42, unknown 88.7
1890 Male, age 53, unknown 87.6
2097 Female, age 72, unknown 82.6
Median raphe nucleus
nTPM: 90.5
2220 Male, age 76, midline 90.5
Pedunculopontine tegmental nucleus
nTPM: 81.8
1921 Female, age 85, both hemispheres 85.7
2334 Male, age 80, both hemispheres 83.3
2338 Male, age 61, both hemispheres 76.4
Periaquaductal grey, anterior
nTPM: 103.6
1795 Male, age 51, unknown 112.9
1947 Male, age 18, unknown 101.1
2502 Female, age 75, unknown 97.0
Periaquaductal grey, dorsal
nTPM: 95.4
2850 Male, age 76, both hemispheres 102.0
1840 Male, age 53, unknown 98.5
1831 Male, age 72, unknown 91.5
2464 Female, age 72, unknown 89.5
Periaquaductal grey, lateral
nTPM: 94.6
2140 Male, age 76, both hemispheres 103.2
2053 Male, age 18, unknown 92.6
2272 Male, age 74, both hemispheres 88.2
Pretectal area
nTPM: 94.8
1816 Male, age 51, unknown 105.6
2825 Male, age 18, unknown 101.0
2407 Male, age 75, both hemispheres 100.9
1944 Female, age 72, unknown 99.8
1817 Female, age 42, unknown 95.2
2007 Male, age 72, unknown 94.7
2667 Female, age 75, unknown 91.9
1815 Male, age 53, unknown 91.2
2316 Male, age 76, right hemisphere 89.8
2224 Female, age 72, unknown 88.1
2273 Male, age 74, both hemispheres 84.8
Red nucleus
nTPM: 86.9
2584 Male, age 75, left hemisphere 106.1
2588 Male, age 74, left hemisphere 96.2
2769 Male, age 72, unknown 93.3
2227 Male, age 72, unknown 92.4
2725 Female, age 75, unknown 89.4
2503 Female, age 72, unknown 87.0
2823 Male, age 76, right hemisphere 84.2
2785 Male, age 18, unknown 83.4
1954 Female, age 42, unknown 79.3
1904 Male, age 53, unknown 79.0
1821 Female, age 72, unknown 76.5
1865 Male, age 51, unknown 76.2
Substantia nigra
nTPM: 93.2
2665 Male, age 74, both hemispheres 111.2
2583 Male, age 75, right hemisphere 108.5
1916 Female, age 42, unknown 102.2
2699 Male, age 18, unknown 99.1
1851 Male, age 51, unknown 97.7
2590 Female, age 75, unknown 97.5
1941 Male, age 53, unknown 91.4
1889 Female, age 72, unknown 86.5
2241 Male, age 72, unknown 70.8
2409 Female, age 72, unknown 67.5
Superior colliculus
nTPM: 99.0
2664 Male, age 75, both hemispheres 145.4
1796 Male, age 53, unknown 109.2
2261 Male, age 18, unknown 107.6
2668 Female, age 75, unknown 95.5
1839 Male, age 51, unknown 95.3
2087 Female, age 72, unknown 91.8
1995 Male, age 72, unknown 90.6
2587 Male, age 74, left hemisphere 88.1
1913 Female, age 42, unknown 85.8
1895 Male, age 76, right hemisphere 80.4
Ventral tegmental area
nTPM: 94.3
2223 Female, age 72, unknown 107.1
1942 Male, age 51, unknown 99.1
2021 Male, age 53, unknown 98.0
1915 Female, age 42, unknown 97.1
2218 Male, age 76, both hemispheres 89.8
2410 Female, age 72, unknown 74.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 119.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.6
Samples: 139

Max nTPM: 291.4
Min nTPM: 46.1
Std nTPM: 40.4
Median nTPM: 111.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 291.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 281.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 213.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 206.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 206.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 196.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 186.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 184.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 177.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 174.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 174.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.9
FF:10158-103A5 76 years, female 45.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.5
Pig sample Sample description nTPM
Midbrain
nTPM: 38.5
Samples: 4

Max nTPM: 45.2
Min nTPM: 31.0
Sample A Female 41.0
Sample B Female 31.0
Sample C Male 36.6
Sample D Male 45.2
Periaqueductal gray
nTPM: 27.4
Samples: 3

Max nTPM: 33.4
Min nTPM: 22.7
Sample B Female 26.0
Sample C Male 33.4
Sample D Male 22.7
Substantia nigra
nTPM: 36.6
Samples: 4

Max nTPM: 44.5
Min nTPM: 28.8
Sample A Female 43.2
Sample B Female 29.9
Sample C Male 44.5
Sample D Male 28.8
Superior colliculi
nTPM: 35.8
Samples: 4

Max nTPM: 44.5
Min nTPM: 30.9
Sample A Female 44.5
Sample B Female 31.6
Sample C Male 30.9
Sample D Male 36.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 41.2
Min nTPM: 29.7
Sample A Male 41.2
Sample B Male 30.9
Sample C Female 29.7
Sample D Female 35.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
69059956 Antisense, RP_050317_04_G04, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.