MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.1 nTPM
HPA:39.1 nTPM
GTEx:65.9 nTPM
FANTOM5:56.8 Scaled Tags Per Million
Pig:58.0 nTPM
Mouse:86.7 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
2411 Female, age 72, unknown 38.8
1870 Female, age 42, unknown 38.1
1833 Male, age 53, unknown 37.2
1830 Male, age 51, unknown 37.1
1827 Male, age 72, unknown 36.7
2019 Male, age 18, unknown 35.9
2219 Male, age 76, both hemispheres 35.4
2666 Male, age 74, left hemisphere 34.2
2828 Female, age 72, unknown 33.8
2586 Male, age 75, left hemisphere 33.4
Dorsal raphe nucleus
nTPM: 36.5
2298 Female, age 72, unknown 40.4
2750 Male, age 76, both hemispheres 37.7
1828 Male, age 53, unknown 35.8
2047 Male, age 72, unknown 35.4
2016 Female, age 72, unknown 33.2
Inferior colliculus
nTPM: 36.8
2097 Female, age 72, unknown 38.7
1848 Female, age 42, unknown 36.9
2849 Male, age 72, unknown 36.8
1890 Male, age 53, unknown 35.0
Median raphe nucleus
nTPM: 38.7
2220 Male, age 76, midline 38.7
Pedunculopontine tegmental nucleus
nTPM: 39.1
2338 Male, age 61, both hemispheres 40.4
2334 Male, age 80, both hemispheres 38.5
1921 Female, age 85, both hemispheres 38.4
Periaquaductal grey, anterior
nTPM: 38.2
1947 Male, age 18, unknown 39.0
2502 Female, age 75, unknown 38.9
1795 Male, age 51, unknown 36.8
Periaquaductal grey, dorsal
nTPM: 34.4
1840 Male, age 53, unknown 36.1
2850 Male, age 76, both hemispheres 35.2
2464 Female, age 72, unknown 33.3
1831 Male, age 72, unknown 33.0
Periaquaductal grey, lateral
nTPM: 34.4
2272 Male, age 74, both hemispheres 37.9
2053 Male, age 18, unknown 32.7
2140 Male, age 76, both hemispheres 32.4
Pretectal area
nTPM: 37.0
1817 Female, age 42, unknown 39.8
2273 Male, age 74, both hemispheres 39.2
1816 Male, age 51, unknown 38.8
2007 Male, age 72, unknown 37.7
1944 Female, age 72, unknown 37.5
2667 Female, age 75, unknown 37.5
2224 Female, age 72, unknown 37.3
1815 Male, age 53, unknown 37.1
2825 Male, age 18, unknown 36.2
2316 Male, age 76, right hemisphere 34.1
2407 Male, age 75, both hemispheres 31.4
Red nucleus
nTPM: 35.9
2725 Female, age 75, unknown 39.1
2503 Female, age 72, unknown 37.4
1821 Female, age 72, unknown 37.0
1904 Male, age 53, unknown 36.4
1954 Female, age 42, unknown 36.4
2227 Male, age 72, unknown 36.0
2785 Male, age 18, unknown 36.0
2823 Male, age 76, right hemisphere 35.9
2769 Male, age 72, unknown 35.8
1865 Male, age 51, unknown 34.4
2588 Male, age 74, left hemisphere 33.9
2584 Male, age 75, left hemisphere 32.6
Substantia nigra
nTPM: 38.4
1916 Female, age 42, unknown 43.2
2241 Male, age 72, unknown 41.9
1889 Female, age 72, unknown 41.0
1851 Male, age 51, unknown 39.3
1941 Male, age 53, unknown 37.8
2699 Male, age 18, unknown 37.4
2409 Female, age 72, unknown 36.9
2665 Male, age 74, both hemispheres 36.8
2590 Female, age 75, unknown 35.7
2583 Male, age 75, right hemisphere 34.0
Superior colliculus
nTPM: 35.9
1796 Male, age 53, unknown 39.1
1895 Male, age 76, right hemisphere 38.2
2261 Male, age 18, unknown 38.1
2587 Male, age 74, left hemisphere 37.0
2087 Female, age 72, unknown 36.0
1913 Female, age 42, unknown 35.9
1839 Male, age 51, unknown 35.8
2668 Female, age 75, unknown 33.9
1995 Male, age 72, unknown 33.6
2664 Male, age 75, both hemispheres 31.0
Ventral tegmental area
nTPM: 37.8
2410 Female, age 72, unknown 40.2
1915 Female, age 42, unknown 39.7
2218 Male, age 76, both hemispheres 39.6
2223 Female, age 72, unknown 37.1
1942 Male, age 51, unknown 36.6
2021 Male, age 53, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.9
Samples: 139

Max nTPM: 113.7
Min nTPM: 31.8
Std nTPM: 14.1
Median nTPM: 64.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 113.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 102.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 98.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 97.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 92.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 89.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 88.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 86.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.8
FF:10158-103A5 76 years, female 56.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.0
Pig sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 77.8
Min nTPM: 47.4
Sample A Female 77.8
Sample B Female 47.4
Sample C Male 53.5
Sample D Male 50.6
Periaqueductal gray
nTPM: 43.8
Samples: 3

Max nTPM: 48.8
Min nTPM: 41.3
Sample B Female 41.3
Sample C Male 48.8
Sample D Male 41.3
Substantia nigra
nTPM: 53.2
Samples: 4

Max nTPM: 71.7
Min nTPM: 40.7
Sample A Female 71.7
Sample B Female 47.6
Sample C Male 52.8
Sample D Male 40.7
Superior colliculi
nTPM: 58.0
Samples: 4

Max nTPM: 73.6
Min nTPM: 43.8
Sample A Female 73.6
Sample B Female 43.8
Sample C Male 61.4
Sample D Male 53.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.7
Samples: 4

Max nTPM: 89.6
Min nTPM: 84.4
Sample A Male 89.6
Sample B Male 84.4
Sample C Female 85.3
Sample D Female 87.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
69174298 Antisense, RP_050329_02_B03, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.