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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:29.6 nTPM
HPA:29.6 nTPM
GTEx:104.5 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Amygdala
nTPM: 29.6
2814 Male, age 76, right hemisphere 30.7
1987 Female, age 91, left hemisphere 30.1
2514 Male, age 75, right hemisphere 30.1
2695 Female, age 67, right hemisphere 30.1
2517 Female, age 94, left hemisphere 27.0
Basal amygdala
nTPM: 26.6
2609 Male, age 75, right hemisphere 28.5
1955 Male, age 76, both hemispheres 28.1
2110 Male, age 80, left hemisphere 27.0
2243 Female, age 91, right hemisphere 26.1
2827 Female, age 67, right hemisphere 25.4
2685 Female, age 94, left hemisphere 24.6
Central amygdala
nTPM: 28.6
1905 Male, age 76, both hemispheres 31.5
2826 Female, age 94, left hemisphere 30.7
2515 Male, age 75, right hemisphere 29.0
2239 Male, age 80, left hemisphere 26.8
2701 Female, age 91, right hemisphere 25.2
Corticomedial amygdala
nTPM: 26.5
2428 Male, age 75, right hemisphere 28.3
2829 Male, age 80, left hemisphere 27.9
2429 Female, age 94, left hemisphere 27.4
2242 Female, age 91, right hemisphere 25.2
2240 Male, age 76, both hemispheres 25.1
2535 Female, age 67, right hemisphere 24.9
Lateral amygdala
nTPM: 27.7
1883 Male, age 76, both hemispheres 30.6
2516 Male, age 75, right hemisphere 30.6
2534 Female, age 94, left hemisphere 29.0
2255 Female, age 91, right hemisphere 25.4
2256 Male, age 80, left hemisphere 25.4
2830 Female, age 67, right hemisphere 25.1
Stria terminalis, bed nucleus
nTPM: 26.5
1974 Female, age 91, both hemispheres 29.3
2486 Female, age 94, both hemispheres 25.2
2201 Male, age 74, unknown 24.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 104.5
Samples: 152

Max nTPM: 329.8
Min nTPM: 42.3
Std nTPM: 42.1
Median nTPM: 95.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 329.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 304.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 259.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 206.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 203.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 190.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 186.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 178.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 178.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 176.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 176.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 172.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 159.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 156.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 153.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 150.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 144.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 142.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 139.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 138.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 136.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 135.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 129.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 127.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 126.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 125.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 125.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 123.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 123.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 123.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 123.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 122.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 122.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 122.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 121.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 120.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 117.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 117.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 117.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 117.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 116.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 116.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 116.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 113.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 112.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 109.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 108.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 107.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 106.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 105.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 104.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 104.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 104.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 102.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 102.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 101.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 100.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 100.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 100.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 99.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 99.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 99.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 99.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 98.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 98.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 98.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 98.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 95.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 95.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 95.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 94.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 94.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 93.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 93.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 92.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 92.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 92.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 92.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 91.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 91.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 90.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 90.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 89.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 88.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 88.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 86.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 86.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 86.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 85.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 85.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 85.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 84.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 84.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 83.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 83.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 83.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 82.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 82.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 81.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 81.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 80.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 79.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 79.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 79.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 78.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 78.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 76.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 76.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 74.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 73.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 70.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 69.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 68.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 66.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 66.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 65.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 62.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 62.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 61.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 61.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 59.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 57.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 55.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 55.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 53.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 53.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 51.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 43.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 42.3
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