MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.6 nTPM
HPA:29.6 nTPM
GTEx:110.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
2411 Female, age 72, unknown 29.3
2019 Male, age 18, unknown 29.2
1827 Male, age 72, unknown 29.1
2828 Female, age 72, unknown 28.2
1870 Female, age 42, unknown 28.0
2586 Male, age 75, left hemisphere 27.5
1833 Male, age 53, unknown 27.1
1830 Male, age 51, unknown 25.9
2219 Male, age 76, both hemispheres 25.5
2666 Male, age 74, left hemisphere 25.4
Dorsal raphe nucleus
nTPM: 29.4
2298 Female, age 72, unknown 32.9
2047 Male, age 72, unknown 30.5
1828 Male, age 53, unknown 28.9
2750 Male, age 76, both hemispheres 28.1
2016 Female, age 72, unknown 26.6
Inferior colliculus
nTPM: 27.1
2097 Female, age 72, unknown 28.6
1890 Male, age 53, unknown 28.2
1848 Female, age 42, unknown 26.9
2849 Male, age 72, unknown 24.6
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Pedunculopontine tegmental nucleus
nTPM: 28.7
2334 Male, age 80, both hemispheres 30.1
1921 Female, age 85, both hemispheres 27.9
2338 Male, age 61, both hemispheres 27.9
Periaquaductal grey, anterior
nTPM: 28.4
1795 Male, age 51, unknown 29.9
1947 Male, age 18, unknown 27.9
2502 Female, age 75, unknown 27.5
Periaquaductal grey, dorsal
nTPM: 25.8
1831 Male, age 72, unknown 26.2
2464 Female, age 72, unknown 26.2
1840 Male, age 53, unknown 25.5
2850 Male, age 76, both hemispheres 25.2
Periaquaductal grey, lateral
nTPM: 26.0
2053 Male, age 18, unknown 26.7
2272 Male, age 74, both hemispheres 26.6
2140 Male, age 76, both hemispheres 24.6
Pretectal area
nTPM: 28.5
2007 Male, age 72, unknown 31.0
1817 Female, age 42, unknown 30.8
1816 Male, age 51, unknown 30.6
1944 Female, age 72, unknown 30.4
2667 Female, age 75, unknown 29.0
1815 Male, age 53, unknown 28.7
2273 Male, age 74, both hemispheres 27.9
2316 Male, age 76, right hemisphere 26.8
2224 Female, age 72, unknown 26.0
2407 Male, age 75, both hemispheres 26.0
2825 Male, age 18, unknown 25.8
Red nucleus
nTPM: 28.5
1821 Female, age 72, unknown 31.0
2503 Female, age 72, unknown 30.9
2785 Male, age 18, unknown 29.5
1954 Female, age 42, unknown 29.2
2227 Male, age 72, unknown 28.7
2769 Male, age 72, unknown 28.4
2823 Male, age 76, right hemisphere 28.4
2588 Male, age 74, left hemisphere 28.0
2725 Female, age 75, unknown 27.9
1865 Male, age 51, unknown 27.5
1904 Male, age 53, unknown 27.5
2584 Male, age 75, left hemisphere 25.7
Substantia nigra
nTPM: 29.6
1916 Female, age 42, unknown 33.1
1889 Female, age 72, unknown 32.2
2409 Female, age 72, unknown 30.5
1851 Male, age 51, unknown 30.2
2590 Female, age 75, unknown 29.7
1941 Male, age 53, unknown 29.3
2665 Male, age 74, both hemispheres 28.0
2241 Male, age 72, unknown 27.9
2699 Male, age 18, unknown 27.9
2583 Male, age 75, right hemisphere 27.6
Superior colliculus
nTPM: 27.7
1796 Male, age 53, unknown 29.8
2087 Female, age 72, unknown 28.8
2261 Male, age 18, unknown 28.8
2668 Female, age 75, unknown 28.4
2587 Male, age 74, left hemisphere 27.7
1895 Male, age 76, right hemisphere 27.4
1913 Female, age 42, unknown 27.2
1839 Male, age 51, unknown 26.9
1995 Male, age 72, unknown 26.4
2664 Male, age 75, both hemispheres 26.1
Ventral tegmental area
nTPM: 28.9
1915 Female, age 42, unknown 31.0
2410 Female, age 72, unknown 30.1
2218 Male, age 76, both hemispheres 28.5
1942 Male, age 51, unknown 28.3
2223 Female, age 72, unknown 28.0
2021 Male, age 53, unknown 27.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 110.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.9
Samples: 139

Max nTPM: 224.9
Min nTPM: 54.3
Std nTPM: 29.7
Median nTPM: 107.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 224.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 202.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 197.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 195.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 187.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 173.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 163.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 162.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 161.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 154.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 154.4
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The Human Protein Atlas

The Human Protein Atlas project is funded
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