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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:120.7 nTPM
HPA:44.5 nTPM
GTEx:120.7 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA049871Antibody HPA074115
Glandular cells MediumMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 44.5
overview
Male, age 65
Small intestine sample 232
nTPM: 43
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 55.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 29.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 49.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 120.7
Samples: 187

Max nTPM: 387.4
Min nTPM: 43.2
Std nTPM: 65.4
Median nTPM: 98.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 387.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 350.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 343.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 295.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 283.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 282.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 273.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 269.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 254.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 245.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 245.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 243.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 236.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 233.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 233.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 230.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 229.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 227.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 214.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 212.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 210.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 210.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 206.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 202.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 197.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 194.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 194.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 190.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 188.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 182.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 182.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 179.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 178.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 177.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 173.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 170.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 170.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 166.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 160.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 158.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 153.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 152.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 152.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 151.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 147.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 147.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 146.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 146.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 145.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 145.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 145.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 143.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 141.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 141.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 140.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 140.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 139.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 139.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 138.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 138.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 137.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 137.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 136.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 129.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 128.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 128.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 127.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 126.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 126.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 125.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 124.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 124.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 122.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 122.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 122.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 122.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 122.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 118.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 117.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 115.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 114.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 114.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 114.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 112.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 112.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 111.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 110.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 109.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 108.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 102.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 100.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 98.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 98.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 98.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 96.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 96.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 95.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 93.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 93.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 93.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 92.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 90.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 90.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 90.1
GTEX-1192X-2526-SM-59868 50-59 years, male 89.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 89.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 88.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 88.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 88.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 88.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 88.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 88.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 87.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 87.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 86.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 85.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 82.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 82.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 81.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 81.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 81.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 80.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 79.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 78.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 78.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 78.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 78.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 77.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 76.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 76.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 76.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 76.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 75.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 75.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 74.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 74.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 74.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 73.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 73.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 73.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 72.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 72.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 71.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 71.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 70.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 69.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 69.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 69.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 68.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 66.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 66.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 66.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 65.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 65.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 65.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 64.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 64.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 64.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 64.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 63.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 62.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 62.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 62.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 61.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 60.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 59.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 58.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 58.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 58.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 57.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 57.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 56.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 56.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 56.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 56.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 54.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 53.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 53.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 52.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 50.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 49.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 48.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 47.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 44.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 44.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 43.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 43.2
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The Human Protein Atlas project is funded
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