MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA:39.5 nTPM
GTEx:40.0 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:14.8 nTPM
Mouse:21.7 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.7
2586 Male, age 75, left hemisphere 50.4
2828 Female, age 72, unknown 39.1
2019 Male, age 18, unknown 36.5
1833 Male, age 53, unknown 34.6
1827 Male, age 72, unknown 33.2
1870 Female, age 42, unknown 33.1
2666 Male, age 74, left hemisphere 32.6
2411 Female, age 72, unknown 31.8
1830 Male, age 51, unknown 31.4
2219 Male, age 76, both hemispheres 24.6
Dorsal raphe nucleus
nTPM: 33.4
1828 Male, age 53, unknown 39.6
2047 Male, age 72, unknown 35.3
2016 Female, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 29.8
2298 Female, age 72, unknown 29.5
Inferior colliculus
nTPM: 36.7
1890 Male, age 53, unknown 38.5
1848 Female, age 42, unknown 38.3
2849 Male, age 72, unknown 36.0
2097 Female, age 72, unknown 34.0
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Pedunculopontine tegmental nucleus
nTPM: 29.7
1921 Female, age 85, both hemispheres 31.2
2334 Male, age 80, both hemispheres 30.3
2338 Male, age 61, both hemispheres 27.6
Periaquaductal grey, anterior
nTPM: 32.4
1795 Male, age 51, unknown 34.8
1947 Male, age 18, unknown 33.1
2502 Female, age 75, unknown 29.2
Periaquaductal grey, dorsal
nTPM: 35.2
2850 Male, age 76, both hemispheres 39.1
2464 Female, age 72, unknown 36.8
1831 Male, age 72, unknown 33.3
1840 Male, age 53, unknown 31.6
Periaquaductal grey, lateral
nTPM: 36.9
2140 Male, age 76, both hemispheres 39.6
2053 Male, age 18, unknown 38.9
2272 Male, age 74, both hemispheres 32.3
Pretectal area
nTPM: 36.7
2667 Female, age 75, unknown 51.2
1817 Female, age 42, unknown 40.5
1815 Male, age 53, unknown 36.5
1944 Female, age 72, unknown 36.2
1816 Male, age 51, unknown 35.9
2273 Male, age 74, both hemispheres 35.6
2407 Male, age 75, both hemispheres 34.6
2007 Male, age 72, unknown 34.3
2825 Male, age 18, unknown 33.9
2316 Male, age 76, right hemisphere 33.4
2224 Female, age 72, unknown 31.7
Red nucleus
nTPM: 39.5
1821 Female, age 72, unknown 45.1
2769 Male, age 72, unknown 43.1
1954 Female, age 42, unknown 43.0
1904 Male, age 53, unknown 42.4
2227 Male, age 72, unknown 41.0
2588 Male, age 74, left hemisphere 41.0
2823 Male, age 76, right hemisphere 40.4
1865 Male, age 51, unknown 40.0
2503 Female, age 72, unknown 38.9
2584 Male, age 75, left hemisphere 34.6
2785 Male, age 18, unknown 32.7
2725 Female, age 75, unknown 31.5
Substantia nigra
nTPM: 35.5
2699 Male, age 18, unknown 40.3
2583 Male, age 75, right hemisphere 38.4
1916 Female, age 42, unknown 37.8
1889 Female, age 72, unknown 37.4
1851 Male, age 51, unknown 36.4
2590 Female, age 75, unknown 35.2
2665 Male, age 74, both hemispheres 35.1
2409 Female, age 72, unknown 32.5
1941 Male, age 53, unknown 31.5
2241 Male, age 72, unknown 30.0
Superior colliculus
nTPM: 35.0
1995 Male, age 72, unknown 39.5
2664 Male, age 75, both hemispheres 38.2
2087 Female, age 72, unknown 36.8
2668 Female, age 75, unknown 34.8
1913 Female, age 42, unknown 34.7
1839 Male, age 51, unknown 34.1
2261 Male, age 18, unknown 33.7
1895 Male, age 76, right hemisphere 32.8
1796 Male, age 53, unknown 32.7
2587 Male, age 74, left hemisphere 32.4
Ventral tegmental area
nTPM: 32.8
1915 Female, age 42, unknown 35.1
2410 Female, age 72, unknown 34.7
2223 Female, age 72, unknown 33.5
1942 Male, age 51, unknown 32.3
2021 Male, age 53, unknown 31.6
2218 Male, age 76, both hemispheres 29.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.0
Samples: 139

Max nTPM: 150.0
Min nTPM: 11.5
Std nTPM: 23.1
Median nTPM: 32.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 150.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 126.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 112.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 110.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 106.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 93.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 89.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 86.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 84.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 84.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 83.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.8
Pig sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 14.2
Sample C Male 17.7
Sample D Male 12.6
Periaqueductal gray
nTPM: 12.2
Samples: 3

Max nTPM: 15.0
Min nTPM: 9.7
Sample B Female 15.0
Sample C Male 12.0
Sample D Male 9.7
Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 16.2
Min nTPM: 10.6
Sample A Female 16.2
Sample B Female 10.8
Sample C Male 16.0
Sample D Male 10.6
Superior colliculi
nTPM: 14.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 12.4
Sample A Female 14.0
Sample B Female 12.4
Sample C Male 18.3
Sample D Male 14.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 19.6
Sample A Male 24.8
Sample B Male 21.4
Sample C Female 19.6
Sample D Female 21.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
71325450 Antisense, RP_050825_02_H07, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.