MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:26.6 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:30.4 nTPM
Allen mouse:23.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.9
2586 Male, age 75, left hemisphere 30.2
2666 Male, age 74, left hemisphere 28.5
1827 Male, age 72, unknown 27.3
1833 Male, age 53, unknown 27.1
2411 Female, age 72, unknown 26.6
2828 Female, age 72, unknown 26.2
2019 Male, age 18, unknown 26.0
1870 Female, age 42, unknown 25.9
1830 Male, age 51, unknown 25.7
2219 Male, age 76, both hemispheres 25.6
Dorsal raphe nucleus
nTPM: 25.6
2298 Female, age 72, unknown 26.0
2750 Male, age 76, both hemispheres 26.0
2047 Male, age 72, unknown 25.6
1828 Male, age 53, unknown 25.3
2016 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 25.1
2849 Male, age 72, unknown 26.3
1848 Female, age 42, unknown 25.1
1890 Male, age 53, unknown 24.6
2097 Female, age 72, unknown 24.2
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Pedunculopontine tegmental nucleus
nTPM: 26.1
2334 Male, age 80, both hemispheres 26.9
2338 Male, age 61, both hemispheres 26.3
1921 Female, age 85, both hemispheres 25.1
Periaquaductal grey, anterior
nTPM: 26.4
1947 Male, age 18, unknown 26.6
1795 Male, age 51, unknown 26.5
2502 Female, age 75, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 25.0
2850 Male, age 76, both hemispheres 25.7
2464 Female, age 72, unknown 25.3
1831 Male, age 72, unknown 25.0
1840 Male, age 53, unknown 24.1
Periaquaductal grey, lateral
nTPM: 24.8
2272 Male, age 74, both hemispheres 25.3
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 23.9
Pretectal area
nTPM: 25.9
1816 Male, age 51, unknown 27.8
1817 Female, age 42, unknown 27.4
1815 Male, age 53, unknown 27.2
2007 Male, age 72, unknown 26.8
2667 Female, age 75, unknown 25.9
2825 Male, age 18, unknown 25.8
1944 Female, age 72, unknown 25.2
2407 Male, age 75, both hemispheres 25.2
2224 Female, age 72, unknown 24.8
2273 Male, age 74, both hemispheres 24.5
2316 Male, age 76, right hemisphere 24.3
Red nucleus
nTPM: 26.8
1821 Female, age 72, unknown 28.4
2725 Female, age 75, unknown 27.7
2584 Male, age 75, left hemisphere 27.5
2588 Male, age 74, left hemisphere 27.5
2503 Female, age 72, unknown 27.2
1904 Male, age 53, unknown 27.1
1954 Female, age 42, unknown 26.7
1865 Male, age 51, unknown 26.6
2823 Male, age 76, right hemisphere 26.0
2769 Male, age 72, unknown 25.8
2227 Male, age 72, unknown 25.7
2785 Male, age 18, unknown 25.4
Substantia nigra
nTPM: 26.3
2699 Male, age 18, unknown 27.2
1851 Male, age 51, unknown 27.1
1916 Female, age 42, unknown 27.1
1889 Female, age 72, unknown 27.0
1941 Male, age 53, unknown 26.5
2583 Male, age 75, right hemisphere 26.2
2665 Male, age 74, both hemispheres 25.8
2590 Female, age 75, unknown 25.6
2241 Male, age 72, unknown 25.3
2409 Female, age 72, unknown 25.0
Superior colliculus
nTPM: 25.6
2261 Male, age 18, unknown 26.3
1796 Male, age 53, unknown 26.2
1913 Female, age 42, unknown 26.1
1995 Male, age 72, unknown 25.9
2587 Male, age 74, left hemisphere 25.9
1839 Male, age 51, unknown 25.6
2668 Female, age 75, unknown 25.6
2087 Female, age 72, unknown 25.1
1895 Male, age 76, right hemisphere 24.7
2664 Male, age 75, both hemispheres 24.6
Ventral tegmental area
nTPM: 26.0
1915 Female, age 42, unknown 26.8
2218 Male, age 76, both hemispheres 26.8
2410 Female, age 72, unknown 26.8
2223 Female, age 72, unknown 25.8
2021 Male, age 53, unknown 24.9
1942 Male, age 51, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.6
Samples: 139

Max nTPM: 55.4
Min nTPM: 14.8
Std nTPM: 5.7
Median nTPM: 26.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 39.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 39.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 39.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 39.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 36.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 35.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.3
FF:10158-103A5 76 years, female 51.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.7
Pig sample Sample description nTPM
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.4
Sample A Female 20.6
Sample B Female 17.4
Sample C Male 17.8
Sample D Male 17.6
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 20.1
Min nTPM: 15.5
Sample B Female 16.9
Sample C Male 20.1
Sample D Male 15.5
Substantia nigra
nTPM: 19.7
Samples: 4

Max nTPM: 22.9
Min nTPM: 16.6
Sample A Female 21.9
Sample B Female 16.6
Sample C Male 22.9
Sample D Male 17.3
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 19.8
Min nTPM: 14.4
Sample A Female 19.8
Sample B Female 14.4
Sample C Male 18.7
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 31.6
Min nTPM: 29.3
Sample A Male 29.3
Sample B Male 30.7
Sample C Female 31.6
Sample D Female 30.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.5
686195 Antisense, RP_040916_01_A03, Mouse strain C57BL/6J (56 days, male) 24.4
77910701 Antisense, RP_070208_04_F02, Mouse strain C57BL/6J (56 days, male) 22.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.