BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA:39.5 nTPM
GTEx:30.2 nTPM
FANTOM5:22.5 Scaled Tags Per Million
Mouse:68.0 nTPM
Allen mouse:6.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.3
1857 Female, age 85, left hemisphere 39.4
1854 Male, age 80, left hemisphere 39.0
2288 Male, age 75, left hemisphere 38.8
2289 Male, age 61, right hemisphere 38.5
2290 Female, age 72, unknown 38.4
2846 Female, age 79, unknown 38.4
2481 Female, age 94, left hemisphere 37.4
1781 Male, age 74, unknown 36.3
Claustrum
nTPM: 37.3
2645 Female, age 72, unknown 40.8
2568 Male, age 61, both hemispheres 39.1
2392 Female, age 94, both hemispheres 38.0
2196 Female, age 79, unknown 37.7
2284 Female, age 91, both hemispheres 36.9
2491 Male, age 75, both hemispheres 36.7
2198 Male, age 80, both hemispheres 36.0
1956 Male, age 74, unknown 35.9
2292 Female, age 85, both hemispheres 35.0
Globus pallidus, externus
nTPM: 39.5
2646 Male, age 61, right hemisphere 42.2
2567 Female, age 72, unknown 40.4
2395 Male, age 75, both hemispheres 39.6
1996 Male, age 80, right hemisphere 38.1
2772 Female, age 79, unknown 36.9
Globus pallidus, internus
nTPM: 39.3
2111 Female, age 85, right hemisphere 40.9
2566 Female, age 72, unknown 40.6
2778 Female, age 91, both hemispheres 39.3
1818 Male, age 74, unknown 39.1
2287 Male, age 75, right hemisphere 38.5
2037 Male, age 80, right hemisphere 38.3
2483 Female, age 94, right hemisphere 38.3
Nucleus accumbens
nTPM: 38.2
2732 Male, age 80, right hemisphere 39.7
2824 Male, age 61, right hemisphere 38.7
2698 Female, age 72, unknown 38.3
1783 Male, age 74, unknown 38.0
1806 Female, age 85, left hemisphere 38.0
1856 Female, age 91, right hemisphere 38.0
2286 Male, age 75, left hemisphere 37.8
2391 Female, age 94, left hemisphere 37.4
Nucleus basalis of Meynert
nTPM: 39.1
2569 Male, age 61, both hemispheres 42.6
2393 Male, age 80, right hemisphere 40.0
2821 Male, age 75, both hemispheres 37.0
2484 Female, age 94, left hemisphere 36.7
Nucleus of the diagonal band
nTPM: 38.0
1979 Male, age 74, unknown 39.3
2029 Male, age 61, right hemisphere 38.2
2195 Female, age 85, both hemispheres 38.2
2775 Male, age 80, right hemisphere 37.8
1812 Female, age 91, both hemispheres 36.3
Olfactory tubercle
nTPM: 37.5
2856 Male, age 75, right hemisphere 38.2
1846 Male, age 80, right hemisphere 37.8
1998 Female, age 91, both hemispheres 37.5
2487 Female, age 94, left hemisphere 36.5
Putamen
nTPM: 38.1
2489 Female, age 72, unknown 40.2
1829 Male, age 74, unknown 38.5
2466 Female, age 79, unknown 38.2
2647 Male, age 75, left hemisphere 38.2
1838 Male, age 80, right hemisphere 37.6
1937 Female, age 91, right hemisphere 37.1
2482 Female, age 94, left hemisphere 36.7
Septal nuclei
nTPM: 38.3
2199 Male, age 80, right hemisphere 41.2
2059 Female, age 85, both hemispheres 39.5
2629 Female, age 94, right hemisphere 38.8
2394 Male, age 61, left hemisphere 38.3
2009 Female, age 91, both hemispheres 37.7
1960 Male, age 74, unknown 37.6
2031 Female, age 72, unknown 35.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.2
Samples: 246

Max nTPM: 62.8
Min nTPM: 15.6
Std nTPM: 7.0
Median nTPM: 29.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 62.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 56.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 55.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 50.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 46.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 45.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 44.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 44.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 44.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 43.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 42.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.5
Samples: 246

Max nTPM: 61.9
Min nTPM: 13.2
Std nTPM: 8.1
Median nTPM: 27.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 61.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 54.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 54.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 51.9
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 49.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 48.4
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 47.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 47.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 46.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 46.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 46.3
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Brain - Putamen (basal ganglia)
Average nTPM: 30.1
Samples: 205

Max nTPM: 55.0
Min nTPM: 14.9
Std nTPM: 6.4
Median nTPM: 29.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 55.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 54.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 48.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 46.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 41.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 41.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 41.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 41.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 41.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 41.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 41.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.5
FF:10164-103B2 76 years, female 22.5
Globus pallidus
Scaled Tags Per Million: 19.6
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 17.1
Nucleus accumbens
Scaled Tags Per Million: 18.7
FF:10037-101F1 23-56 years, mixed 18.7
Putamen
Scaled Tags Per Million: 19.1
FF:10176-103C5 60 years, female 19.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.4
Samples: 4

Max nTPM: 71.1
Min nTPM: 60.7
Sample A Male 60.7
Sample B Male 61.8
Sample C Female 64.0
Sample D Female 71.1
Septum
nTPM: 54.0
Samples: 4

Max nTPM: 57.7
Min nTPM: 50.8
Sample A Male 57.7
Sample B Male 50.8
Sample C Female 51.8
Sample D Female 55.5
Ventral forebrain
nTPM: 68.0
Samples: 4

Max nTPM: 71.6
Min nTPM: 64.0
Sample A Male 70.6
Sample B Male 64.0
Sample C Female 65.6
Sample D Female 71.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.0
69059941 Antisense, RP_050317_04_F01, Mouse strain C57BL/6J (56 days, male) 6.0
Pallidum
Expression energy: 6.5
69059941 Antisense, RP_050317_04_F01, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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