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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:32.3 nTPM
GTEx:31.6 nTPM
FANTOM5:62.8 Scaled Tags Per Million
Pig:15.7 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 32.3
Sample id Sample description nTPM
Putamen
nTPM: 32.3
2482 Female, age 94, left hemisphere 35.7
1937 Female, age 91, right hemisphere 33.5
2466 Female, age 79, unknown 33.0
1838 Male, age 80, right hemisphere 32.1
1829 Male, age 74, unknown 31.6
2647 Male, age 75, left hemisphere 30.7
2489 Female, age 72, unknown 29.5

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 31.6
Samples: 205

Max nTPM: 52.6
Min nTPM: 21.0
Std nTPM: 4.9
Median nTPM: 30.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 52.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 47.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 46.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 46.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 43.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 43.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 42.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 39.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 39.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 39.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 39.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 39.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 39.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 39.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 38.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 38.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 38.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 38.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 38.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 37.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 37.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 37.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 37.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 37.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 37.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 37.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 37.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 36.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 36.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 36.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 36.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 35.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 35.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 35.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 35.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 35.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 35.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 35.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 35.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 35.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 35.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 35.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 35.3
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 35.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 35.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 34.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 34.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 34.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 34.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 34.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 34.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 34.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 34.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 34.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 34.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 33.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 33.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 33.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 33.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 33.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 33.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 33.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 33.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 33.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 33.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 33.2
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 33.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 33.2
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 33.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 33.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 32.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 32.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 32.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 32.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 32.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 32.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 32.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 32.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 32.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 32.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 32.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 31.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 31.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 31.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 31.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 31.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 31.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 31.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 31.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 31.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 31.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 31.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 31.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 31.2
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 31.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 31.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 31.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 31.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 31.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 30.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 30.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 30.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 30.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 30.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 30.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 30.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 30.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 30.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 30.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 30.3
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 30.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 30.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 30.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 30.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 30.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 30.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 30.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 30.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 29.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 29.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 29.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 29.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 29.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 29.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 29.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 29.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 29.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 29.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 29.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 29.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 29.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 29.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 29.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 29.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 29.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 29.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 29.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 28.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 28.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 28.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 28.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 28.7
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 28.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 28.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 28.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 28.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 28.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 28.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 28.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 28.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 28.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 28.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 28.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 27.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 27.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 27.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 27.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 27.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 27.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 27.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 27.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 27.4
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 27.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 27.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 27.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 27.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 27.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 27.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 27.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 27.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 27.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 26.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 26.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 26.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 26.6
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 26.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 26.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 26.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 26.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 26.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 26.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 26.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 26.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 25.9
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 25.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 25.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 25.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 25.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 25.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 25.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 25.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 25.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 25.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 25.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 24.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 24.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 24.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 24.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 24.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 23.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 23.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 23.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 23.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 21.0
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 62.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 62.8
FF:10176-103C5 60 years, female 62.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.7
Pig sample Sample description nTPM
Putamen
nTPM: 15.8
Samples: 4

Max nTPM: 19.9
Min nTPM: 13.1
Sample A Female 15.3
Sample B Female 13.1
Sample C Male 19.9
Sample D Male 14.7

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