MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:36.5 nTPM
FANTOM5:83.3 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:128.4 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.7
2411 Female, age 72, unknown 38.2
1870 Female, age 42, unknown 36.6
1827 Male, age 72, unknown 36.2
2019 Male, age 18, unknown 35.1
1833 Male, age 53, unknown 34.7
2828 Female, age 72, unknown 34.6
2219 Male, age 76, both hemispheres 34.0
1830 Male, age 51, unknown 33.4
2666 Male, age 74, left hemisphere 33.3
2586 Male, age 75, left hemisphere 30.5
Dorsal raphe nucleus
nTPM: 35.9
2298 Female, age 72, unknown 40.2
2750 Male, age 76, both hemispheres 36.8
1828 Male, age 53, unknown 35.0
2047 Male, age 72, unknown 34.2
2016 Female, age 72, unknown 33.5
Inferior colliculus
nTPM: 34.5
2097 Female, age 72, unknown 37.5
1890 Male, age 53, unknown 34.1
1848 Female, age 42, unknown 33.6
2849 Male, age 72, unknown 32.9
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Pedunculopontine tegmental nucleus
nTPM: 35.4
2334 Male, age 80, both hemispheres 36.3
1921 Female, age 85, both hemispheres 35.3
2338 Male, age 61, both hemispheres 34.5
Periaquaductal grey, anterior
nTPM: 35.5
1947 Male, age 18, unknown 36.7
2502 Female, age 75, unknown 35.0
1795 Male, age 51, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 34.0
1840 Male, age 53, unknown 35.4
2464 Female, age 72, unknown 34.7
2850 Male, age 76, both hemispheres 33.1
1831 Male, age 72, unknown 32.9
Periaquaductal grey, lateral
nTPM: 33.9
2272 Male, age 74, both hemispheres 34.6
2140 Male, age 76, both hemispheres 33.6
2053 Male, age 18, unknown 33.4
Pretectal area
nTPM: 35.1
2007 Male, age 72, unknown 36.3
1817 Female, age 42, unknown 36.2
1816 Male, age 51, unknown 36.1
2667 Female, age 75, unknown 36.0
2273 Male, age 74, both hemispheres 35.9
1944 Female, age 72, unknown 35.8
2224 Female, age 72, unknown 35.7
1815 Male, age 53, unknown 35.1
2825 Male, age 18, unknown 34.2
2316 Male, age 76, right hemisphere 33.3
2407 Male, age 75, both hemispheres 31.9
Red nucleus
nTPM: 34.6
1821 Female, age 72, unknown 37.4
2503 Female, age 72, unknown 35.5
2823 Male, age 76, right hemisphere 35.3
1904 Male, age 53, unknown 35.1
2769 Male, age 72, unknown 35.1
1865 Male, age 51, unknown 34.9
2725 Female, age 75, unknown 34.7
1954 Female, age 42, unknown 34.4
2227 Male, age 72, unknown 34.3
2588 Male, age 74, left hemisphere 34.0
2785 Male, age 18, unknown 33.9
2584 Male, age 75, left hemisphere 30.3
Substantia nigra
nTPM: 37.0
1916 Female, age 42, unknown 41.2
2241 Male, age 72, unknown 40.1
1851 Male, age 51, unknown 39.0
2409 Female, age 72, unknown 37.6
1941 Male, age 53, unknown 36.4
1889 Female, age 72, unknown 36.3
2590 Female, age 75, unknown 36.2
2699 Male, age 18, unknown 35.6
2665 Male, age 74, both hemispheres 34.7
2583 Male, age 75, right hemisphere 32.9
Superior colliculus
nTPM: 33.9
1796 Male, age 53, unknown 35.6
1895 Male, age 76, right hemisphere 35.5
2587 Male, age 74, left hemisphere 35.4
2261 Male, age 18, unknown 35.2
2087 Female, age 72, unknown 33.8
2668 Female, age 75, unknown 33.8
1839 Male, age 51, unknown 33.3
1913 Female, age 42, unknown 32.9
1995 Male, age 72, unknown 32.5
2664 Male, age 75, both hemispheres 30.7
Ventral tegmental area
nTPM: 36.1
2410 Female, age 72, unknown 39.9
1915 Female, age 42, unknown 37.8
2218 Male, age 76, both hemispheres 36.0
1942 Male, age 51, unknown 35.1
2223 Female, age 72, unknown 34.6
2021 Male, age 53, unknown 33.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.5
Samples: 139

Max nTPM: 57.4
Min nTPM: 24.4
Std nTPM: 6.5
Median nTPM: 34.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 57.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 57.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 54.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 49.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 49.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 47.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 47.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 46.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 46.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.3
FF:10158-103A5 76 years, female 83.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 22.0
Min nTPM: 17.8
Sample A Female 21.6
Sample B Female 17.8
Sample C Male 22.0
Sample D Male 19.6
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 19.8
Min nTPM: 14.6
Sample B Female 17.0
Sample C Male 19.8
Sample D Male 14.6
Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 24.1
Min nTPM: 15.2
Sample A Female 24.1
Sample B Female 16.4
Sample C Male 21.2
Sample D Male 15.2
Superior colliculi
nTPM: 21.3
Samples: 4

Max nTPM: 24.4
Min nTPM: 19.0
Sample A Female 22.5
Sample B Female 19.0
Sample C Male 24.4
Sample D Male 19.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.4
Samples: 4

Max nTPM: 131.5
Min nTPM: 125.2
Sample A Male 125.2
Sample B Male 131.5
Sample C Female 126.5
Sample D Female 130.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
532578 Antisense, RP_040810_02_B12, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.