BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:32.3 nTPM
HPA:32.3 nTPM
GTEx:34.0 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:5.6 nTPM

CAUDATE - Antibody stainingi
Antibody HPA003647
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 24.9
2846 Female, age 79, unknown 27.5
2290 Female, age 72, unknown 27.0
1857 Female, age 85, left hemisphere 25.8
1854 Male, age 80, left hemisphere 25.5
1781 Male, age 74, unknown 24.3
2289 Male, age 61, right hemisphere 23.7
2288 Male, age 75, left hemisphere 23.0
2481 Female, age 94, left hemisphere 22.9
Claustrum
nTPM: 26.0
2645 Female, age 72, unknown 29.7
2568 Male, age 61, both hemispheres 26.9
2198 Male, age 80, both hemispheres 26.8
2284 Female, age 91, both hemispheres 26.8
1956 Male, age 74, unknown 26.0
2491 Male, age 75, both hemispheres 25.8
2196 Female, age 79, unknown 24.8
2292 Female, age 85, both hemispheres 23.7
2392 Female, age 94, both hemispheres 23.7
Globus pallidus, externus
nTPM: 22.2
2646 Male, age 61, right hemisphere 23.3
2395 Male, age 75, both hemispheres 22.7
2772 Female, age 79, unknown 21.9
1996 Male, age 80, right hemisphere 21.7
2567 Female, age 72, unknown 21.5
Globus pallidus, internus
nTPM: 21.1
2483 Female, age 94, right hemisphere 24.6
2287 Male, age 75, right hemisphere 21.8
2037 Male, age 80, right hemisphere 20.9
1818 Male, age 74, unknown 20.8
2566 Female, age 72, unknown 20.3
2778 Female, age 91, both hemispheres 20.3
2111 Female, age 85, right hemisphere 19.2
Nucleus accumbens
nTPM: 24.8
1856 Female, age 91, right hemisphere 27.3
1783 Male, age 74, unknown 26.4
2824 Male, age 61, right hemisphere 25.8
1806 Female, age 85, left hemisphere 25.2
2698 Female, age 72, unknown 24.9
2732 Male, age 80, right hemisphere 23.6
2286 Male, age 75, left hemisphere 23.5
2391 Female, age 94, left hemisphere 21.5
Nucleus basalis of Meynert
nTPM: 23.7
2393 Male, age 80, right hemisphere 24.6
2569 Male, age 61, both hemispheres 24.2
2484 Female, age 94, left hemisphere 23.6
2821 Male, age 75, both hemispheres 22.5
Nucleus of the diagonal band
nTPM: 32.3
2195 Female, age 85, both hemispheres 37.8
2775 Male, age 80, right hemisphere 36.5
1812 Female, age 91, both hemispheres 35.6
2029 Male, age 61, right hemisphere 26.3
1979 Male, age 74, unknown 25.4
Olfactory tubercle
nTPM: 28.1
1846 Male, age 80, right hemisphere 31.1
1998 Female, age 91, both hemispheres 29.2
2487 Female, age 94, left hemisphere 27.4
2856 Male, age 75, right hemisphere 24.9
Putamen
nTPM: 25.2
2466 Female, age 79, unknown 28.1
1838 Male, age 80, right hemisphere 27.2
1829 Male, age 74, unknown 25.3
2489 Female, age 72, unknown 24.7
2647 Male, age 75, left hemisphere 24.7
1937 Female, age 91, right hemisphere 23.8
2482 Female, age 94, left hemisphere 23.0
Septal nuclei
nTPM: 30.9
1960 Male, age 74, unknown 43.9
2031 Female, age 72, unknown 35.1
2059 Female, age 85, both hemispheres 32.9
2009 Female, age 91, both hemispheres 32.1
2629 Female, age 94, right hemisphere 27.3
2394 Male, age 61, left hemisphere 23.1
2199 Male, age 80, right hemisphere 22.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.5
Samples: 246

Max nTPM: 54.4
Min nTPM: 11.8
Std nTPM: 7.0
Median nTPM: 26.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 46.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 45.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 44.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 43.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 42.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 42.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 42.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 42.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 42.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.0
Samples: 246

Max nTPM: 56.7
Min nTPM: 10.7
Std nTPM: 8.5
Median nTPM: 35.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 56.7
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 56.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 54.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 51.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 50.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 50.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 49.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 48.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 48.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 48.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 47.8
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Brain - Putamen (basal ganglia)
Average nTPM: 27.4
Samples: 205

Max nTPM: 52.1
Min nTPM: 12.6
Std nTPM: 7.6
Median nTPM: 27.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 52.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 43.7
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 43.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 42.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 42.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 41.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 41.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 41.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 41.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 40.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 40.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 36.1
FF:10164-103B2 76 years, female 36.1
Globus pallidus
Scaled Tags Per Million: 20.2
FF:10175-103C4 60 years, female 25.2
FF:10161-103A8 76 years, female 15.1
Nucleus accumbens
Scaled Tags Per Million: 33.1
FF:10037-101F1 23-56 years, mixed 33.1
Putamen
Scaled Tags Per Million: 34.6
FF:10176-103C5 60 years, female 34.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.0
Sample A Female 6.3
Sample B Female 5.4
Sample C Male 5.7
Sample D Male 5.0
Putamen
nTPM: 4.9
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 5.0
Sample C Male 4.9
Sample D Male 5.3
Septum
nTPM: 5.2
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.3
Sample A Female 6.4
Sample B Female 5.1
Sample C Male 4.3
Sample D Male 4.9
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.1
Sample A Female 5.8
Sample B Female 5.1
Sample C Male 4.1
Sample D Male 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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