BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:48.8 nTPM
HPA:48.8 nTPM
GTEx:15.2 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:6.5 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000635Antibody CAB017444
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.7
2481 Female, age 94, left hemisphere 43.0
2846 Female, age 79, unknown 42.6
2289 Male, age 61, right hemisphere 41.7
1781 Male, age 74, unknown 41.2
1854 Male, age 80, left hemisphere 40.5
1857 Female, age 85, left hemisphere 39.5
2288 Male, age 75, left hemisphere 38.6
2290 Female, age 72, unknown 38.3
Claustrum
nTPM: 37.6
2292 Female, age 85, both hemispheres 44.4
2196 Female, age 79, unknown 40.7
2198 Male, age 80, both hemispheres 38.6
2645 Female, age 72, unknown 36.9
2284 Female, age 91, both hemispheres 36.6
1956 Male, age 74, unknown 36.2
2392 Female, age 94, both hemispheres 36.0
2491 Male, age 75, both hemispheres 34.7
2568 Male, age 61, both hemispheres 34.5
Globus pallidus, externus
nTPM: 48.8
2395 Male, age 75, both hemispheres 76.2
1996 Male, age 80, right hemisphere 44.0
2772 Female, age 79, unknown 43.9
2567 Female, age 72, unknown 40.7
2646 Male, age 61, right hemisphere 39.4
Globus pallidus, internus
nTPM: 42.1
1818 Male, age 74, unknown 47.5
2566 Female, age 72, unknown 44.4
2037 Male, age 80, right hemisphere 43.9
2483 Female, age 94, right hemisphere 41.2
2111 Female, age 85, right hemisphere 41.1
2778 Female, age 91, both hemispheres 40.9
2287 Male, age 75, right hemisphere 36.1
Nucleus accumbens
nTPM: 39.0
2698 Female, age 72, unknown 41.2
2391 Female, age 94, left hemisphere 41.1
2732 Male, age 80, right hemisphere 40.4
1783 Male, age 74, unknown 38.8
1806 Female, age 85, left hemisphere 38.8
1856 Female, age 91, right hemisphere 38.6
2286 Male, age 75, left hemisphere 37.5
2824 Male, age 61, right hemisphere 36.0
Nucleus basalis of Meynert
nTPM: 40.5
2821 Male, age 75, both hemispheres 43.2
2484 Female, age 94, left hemisphere 40.0
2393 Male, age 80, right hemisphere 39.8
2569 Male, age 61, both hemispheres 39.1
Nucleus of the diagonal band
nTPM: 37.6
1812 Female, age 91, both hemispheres 40.1
2195 Female, age 85, both hemispheres 37.9
1979 Male, age 74, unknown 37.4
2775 Male, age 80, right hemisphere 37.2
2029 Male, age 61, right hemisphere 35.3
Olfactory tubercle
nTPM: 37.3
1846 Male, age 80, right hemisphere 38.1
2856 Male, age 75, right hemisphere 37.7
2487 Female, age 94, left hemisphere 37.6
1998 Female, age 91, both hemispheres 35.9
Putamen
nTPM: 39.6
2482 Female, age 94, left hemisphere 46.7
2489 Female, age 72, unknown 40.4
2466 Female, age 79, unknown 39.1
1937 Female, age 91, right hemisphere 39.0
1829 Male, age 74, unknown 38.4
1838 Male, age 80, right hemisphere 38.3
2647 Male, age 75, left hemisphere 35.1
Septal nuclei
nTPM: 38.5
2199 Male, age 80, right hemisphere 39.8
2059 Female, age 85, both hemispheres 39.3
2394 Male, age 61, left hemisphere 38.6
2629 Female, age 94, right hemisphere 38.6
1960 Male, age 74, unknown 38.3
2009 Female, age 91, both hemispheres 37.6
2031 Female, age 72, unknown 37.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.1
Samples: 246

Max nTPM: 90.8
Min nTPM: 1.9
Std nTPM: 10.4
Median nTPM: 9.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 90.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 69.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 59.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 48.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 45.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 38.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 38.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 34.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 33.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 32.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 31.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.1
Samples: 246

Max nTPM: 104.3
Min nTPM: 1.9
Std nTPM: 12.5
Median nTPM: 9.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 104.3
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 76.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 63.2
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 62.2
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 60.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 51.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 46.3
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 45.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 44.6
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 39.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 38.5
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Brain - Putamen (basal ganglia)
Average nTPM: 15.2
Samples: 205

Max nTPM: 321.5
Min nTPM: 2.3
Std nTPM: 27.4
Median nTPM: 9.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 321.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 200.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 82.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 70.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 70.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 45.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 37.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 37.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 37.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 37.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 36.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.7
FF:10164-103B2 76 years, female 38.7
Globus pallidus
Scaled Tags Per Million: 71.8
FF:10161-103A8 76 years, female 71.9
FF:10175-103C4 60 years, female 71.8
Nucleus accumbens
Scaled Tags Per Million: 12.0
FF:10037-101F1 23-56 years, mixed 12.0
Putamen
Scaled Tags Per Million: 28.6
FF:10176-103C5 60 years, female 28.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.2
Pig sample Sample description nTPM
Caudate
nTPM: 4.8
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.1
Sample A Female 4.6
Sample B Female 5.6
Sample C Male 4.9
Sample D Male 4.1
Putamen
nTPM: 5.8
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.1
Sample A Female 7.0
Sample B Female 5.4
Sample C Male 5.5
Sample D Male 5.1
Septum
nTPM: 6.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.4
Sample A Female 7.7
Sample B Female 5.9
Sample C Male 5.9
Sample D Male 5.4
Ventral pallidum
nTPM: 6.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 6.9
Sample C Male 6.1
Sample D Male 5.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.7
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Male 6.7
Sample B Male 4.9
Sample C Female 5.7
Sample D Female 5.5
Septum
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Male 4.9
Sample B Male 5.9
Sample C Female 6.7
Sample D Female 5.7
Ventral forebrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.5
Sample A Male 5.5
Sample B Male 6.5
Sample C Female 7.0
Sample D Female 7.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
71617960 Antisense, RP_050927_02_H12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
71617960 Antisense, RP_050927_02_H12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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