MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:4.9 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:60.3 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.8
2586 Male, age 75, left hemisphere 10.7
1830 Male, age 51, unknown 7.9
1833 Male, age 53, unknown 6.5
2411 Female, age 72, unknown 4.6
1870 Female, age 42, unknown 4.1
1827 Male, age 72, unknown 3.5
2219 Male, age 76, both hemispheres 3.0
2019 Male, age 18, unknown 2.8
2828 Female, age 72, unknown 2.3
2666 Male, age 74, left hemisphere 2.2
Dorsal raphe nucleus
nTPM: 14.8
1828 Male, age 53, unknown 28.4
2047 Male, age 72, unknown 28.4
2016 Female, age 72, unknown 7.0
2298 Female, age 72, unknown 5.0
2750 Male, age 76, both hemispheres 5.0
Inferior colliculus
nTPM: 9.5
1848 Female, age 42, unknown 16.2
2849 Male, age 72, unknown 10.5
2097 Female, age 72, unknown 6.8
1890 Male, age 53, unknown 4.5
Median raphe nucleus
nTPM: 2.5
2220 Male, age 76, midline 2.5
Pedunculopontine tegmental nucleus
nTPM: 5.4
2338 Male, age 61, both hemispheres 6.8
2334 Male, age 80, both hemispheres 5.1
1921 Female, age 85, both hemispheres 4.3
Periaquaductal grey, anterior
nTPM: 4.0
2502 Female, age 75, unknown 6.9
1947 Male, age 18, unknown 3.2
1795 Male, age 51, unknown 1.8
Periaquaductal grey, dorsal
nTPM: 4.2
2464 Female, age 72, unknown 7.8
2850 Male, age 76, both hemispheres 3.7
1840 Male, age 53, unknown 3.6
1831 Male, age 72, unknown 1.8
Periaquaductal grey, lateral
nTPM: 3.3
2140 Male, age 76, both hemispheres 4.0
2053 Male, age 18, unknown 3.6
2272 Male, age 74, both hemispheres 2.4
Pretectal area
nTPM: 2.3
2407 Male, age 75, both hemispheres 4.1
2825 Male, age 18, unknown 3.8
2316 Male, age 76, right hemisphere 3.4
2224 Female, age 72, unknown 3.1
2667 Female, age 75, unknown 2.3
2273 Male, age 74, both hemispheres 2.0
1816 Male, age 51, unknown 1.6
1817 Female, age 42, unknown 1.6
1944 Female, age 72, unknown 1.5
2007 Male, age 72, unknown 1.4
1815 Male, age 53, unknown 0.6
Red nucleus
nTPM: 3.4
2584 Male, age 75, left hemisphere 5.6
2227 Male, age 72, unknown 5.3
2769 Male, age 72, unknown 5.1
2588 Male, age 74, left hemisphere 3.8
2785 Male, age 18, unknown 3.2
1821 Female, age 72, unknown 3.0
1954 Female, age 42, unknown 3.0
2725 Female, age 75, unknown 2.9
1865 Male, age 51, unknown 2.7
2823 Male, age 76, right hemisphere 2.7
2503 Female, age 72, unknown 2.6
1904 Male, age 53, unknown 1.1
Substantia nigra
nTPM: 3.3
1941 Male, age 53, unknown 11.0
2583 Male, age 75, right hemisphere 3.7
2699 Male, age 18, unknown 2.9
2409 Female, age 72, unknown 2.7
1851 Male, age 51, unknown 2.5
2665 Male, age 74, both hemispheres 2.5
1889 Female, age 72, unknown 2.1
1916 Female, age 42, unknown 2.1
2241 Male, age 72, unknown 2.0
2590 Female, age 75, unknown 1.7
Superior colliculus
nTPM: 3.6
1895 Male, age 76, right hemisphere 9.0
2664 Male, age 75, both hemispheres 6.5
1839 Male, age 51, unknown 6.1
2587 Male, age 74, left hemisphere 3.0
2261 Male, age 18, unknown 2.5
2668 Female, age 75, unknown 2.4
1796 Male, age 53, unknown 2.0
2087 Female, age 72, unknown 1.7
1913 Female, age 42, unknown 1.5
1995 Male, age 72, unknown 1.3
Ventral tegmental area
nTPM: 4.4
2223 Female, age 72, unknown 10.9
2021 Male, age 53, unknown 3.8
1915 Female, age 42, unknown 3.6
1942 Male, age 51, unknown 3.0
2218 Male, age 76, both hemispheres 2.6
2410 Female, age 72, unknown 2.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.9
Samples: 139

Max nTPM: 49.9
Min nTPM: 0.9
Std nTPM: 5.4
Median nTPM: 3.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 24.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 21.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 12.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 12.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 10.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 9.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 9.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.6
Pig sample Sample description nTPM
Midbrain
nTPM: 2.6
Samples: 4

Max nTPM: 4.5
Min nTPM: 1.0
Sample A Female 3.4
Sample B Female 4.5
Sample C Male 1.5
Sample D Male 1.0
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 5.8
Min nTPM: 3.3
Sample B Female 5.8
Sample C Male 4.7
Sample D Male 3.3
Substantia nigra
nTPM: 1.6
Samples: 4

Max nTPM: 3.7
Min nTPM: 0.8
Sample A Female 3.7
Sample B Female 0.8
Sample C Male 1.2
Sample D Male 0.8
Superior colliculi
nTPM: 4.5
Samples: 4

Max nTPM: 12.8
Min nTPM: 0.7
Sample A Female 2.4
Sample B Female 0.7
Sample C Male 2.0
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 66.2
Min nTPM: 56.2
Sample A Male 66.2
Sample B Male 61.9
Sample C Female 56.9
Sample D Female 56.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70305592 Antisense, RP_050609_04_E12, Mouse strain C57BL/6J (56 days, male) 1.5
73930835 Antisense, RP_051214_04_C10, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.