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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:965.6 nTPM
HPA:965.6 nTPM
GTEx:1312.1 nTPM
FANTOM5:70.0 Scaled Tags Per Million
Pig:161.3 nTPM
Mouse:917.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 965.6
Sample id Sample description nTPM
Amygdala
nTPM: 949.7
2695 Female, age 67, right hemisphere 1020.9
2514 Male, age 75, right hemisphere 960.0
2517 Female, age 94, left hemisphere 942.2
1987 Female, age 91, left hemisphere 932.2
2814 Male, age 76, right hemisphere 893.1
Basal amygdala
nTPM: 923.8
2827 Female, age 67, right hemisphere 1012.5
2609 Male, age 75, right hemisphere 944.8
2110 Male, age 80, left hemisphere 929.7
2685 Female, age 94, left hemisphere 898.3
2243 Female, age 91, right hemisphere 886.7
1955 Male, age 76, both hemispheres 871.0
Central amygdala
nTPM: 950.6
2826 Female, age 94, left hemisphere 1123.3
2515 Male, age 75, right hemisphere 986.2
2239 Male, age 80, left hemisphere 898.1
1905 Male, age 76, both hemispheres 879.6
2701 Female, age 91, right hemisphere 865.7
Corticomedial amygdala
nTPM: 907.3
2428 Male, age 75, right hemisphere 962.6
2535 Female, age 67, right hemisphere 928.9
2829 Male, age 80, left hemisphere 926.5
2242 Female, age 91, right hemisphere 891.4
2429 Female, age 94, left hemisphere 878.4
2240 Male, age 76, both hemispheres 856.1
Lateral amygdala
nTPM: 965.6
2830 Female, age 67, right hemisphere 1106.3
2516 Male, age 75, right hemisphere 1006.9
2534 Female, age 94, left hemisphere 979.5
2256 Male, age 80, left hemisphere 928.1
2255 Female, age 91, right hemisphere 894.8
1883 Male, age 76, both hemispheres 878.3
Stria terminalis, bed nucleus
nTPM: 869.9
1974 Female, age 91, both hemispheres 896.1
2201 Male, age 74, unknown 863.3
2486 Female, age 94, both hemispheres 850.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1312.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1312.1
Samples: 152

Max nTPM: 2910.9
Min nTPM: 696.5
Std nTPM: 351.3
Median nTPM: 1242.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2910.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2532.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2520.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2351.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2250.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2247.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1987.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1906.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1902.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1893.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1885.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1866.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1845.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1782.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1761.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1758.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1748.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1742.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1709.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1685.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1641.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1621.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1600.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1577.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1560.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1559.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1543.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1534.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1529.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1522.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1522.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1490.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1460.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1453.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1433.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1423.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1417.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1417.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1416.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1409.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1407.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1402.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1400.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1391.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1389.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1383.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1374.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1372.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1362.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1359.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1358.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1352.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1348.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1343.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1342.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1341.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1340.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1339.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1335.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1328.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1326.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1324.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1316.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1309.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1308.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1308.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1295.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1285.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1284.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1281.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1272.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1270.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1264.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1262.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1256.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1243.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1242.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1240.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1238.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1235.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1229.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1227.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1223.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1221.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1220.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1219.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1216.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1212.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1208.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1203.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1187.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1183.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1182.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1179.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1172.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1171.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1171.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1157.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1147.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1145.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1141.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1141.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1135.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1134.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1131.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1125.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1123.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1112.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1103.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1103.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1102.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1091.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1090.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1090.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1082.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1080.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1078.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1073.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1073.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1058.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1052.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1047.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1045.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1042.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1033.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1027.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1022.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1022.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1019.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1003.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1003.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 990.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 984.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 980.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 980.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 963.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 947.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 946.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 946.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 923.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 918.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 908.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 905.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 883.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 882.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 874.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 869.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 868.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 853.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 820.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 757.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 696.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 70.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 70.0
FF:10151-102I7 76 years, female 70.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 161.3
Pig sample Sample description nTPM
Amygdala
nTPM: 161.3
Samples: 4

Max nTPM: 199.7
Min nTPM: 115.6
Sample A Female 199.7
Sample B Female 180.3
Sample C Male 149.5
Sample D Male 115.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 917.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 917.0
Samples: 4

Max nTPM: 943.6
Min nTPM: 890.1
Sample A Male 943.6
Sample B Male 942.9
Sample C Female 890.1
Sample D Female 891.5

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