MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:951.1 nTPM
HPA:951.1 nTPM
GTEx:1331.0 nTPM
FANTOM5:77.6 Scaled Tags Per Million
Pig:241.0 nTPM
Mouse:904.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 951.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 939.0
2586 Male, age 75, left hemisphere 1004.2
2666 Male, age 74, left hemisphere 976.2
2828 Female, age 72, unknown 960.9
1870 Female, age 42, unknown 950.7
2411 Female, age 72, unknown 938.1
1827 Male, age 72, unknown 930.0
1830 Male, age 51, unknown 924.7
1833 Male, age 53, unknown 918.3
2019 Male, age 18, unknown 904.7
2219 Male, age 76, both hemispheres 882.0
Dorsal raphe nucleus
nTPM: 925.2
2016 Female, age 72, unknown 948.1
2298 Female, age 72, unknown 931.6
1828 Male, age 53, unknown 930.9
2750 Male, age 76, both hemispheres 915.2
2047 Male, age 72, unknown 900.3
Inferior colliculus
nTPM: 939.0
1890 Male, age 53, unknown 945.0
1848 Female, age 42, unknown 938.7
2097 Female, age 72, unknown 937.8
2849 Male, age 72, unknown 934.3
Median raphe nucleus
nTPM: 899.6
2220 Male, age 76, midline 899.6
Pedunculopontine tegmental nucleus
nTPM: 916.7
2338 Male, age 61, both hemispheres 935.1
2334 Male, age 80, both hemispheres 924.3
1921 Female, age 85, both hemispheres 890.5
Periaquaductal grey, anterior
nTPM: 936.7
2502 Female, age 75, unknown 966.0
1795 Male, age 51, unknown 925.1
1947 Male, age 18, unknown 918.8
Periaquaductal grey, dorsal
nTPM: 921.7
1840 Male, age 53, unknown 969.1
1831 Male, age 72, unknown 920.1
2464 Female, age 72, unknown 920.1
2850 Male, age 76, both hemispheres 877.4
Periaquaductal grey, lateral
nTPM: 910.9
2053 Male, age 18, unknown 931.5
2140 Male, age 76, both hemispheres 901.8
2272 Male, age 74, both hemispheres 899.5
Pretectal area
nTPM: 903.3
2825 Male, age 18, unknown 944.3
2407 Male, age 75, both hemispheres 920.9
2007 Male, age 72, unknown 914.1
2316 Male, age 76, right hemisphere 911.4
2224 Female, age 72, unknown 906.7
2273 Male, age 74, both hemispheres 900.1
1817 Female, age 42, unknown 899.9
1815 Male, age 53, unknown 898.2
1816 Male, age 51, unknown 889.3
1944 Female, age 72, unknown 881.3
2667 Female, age 75, unknown 869.8
Red nucleus
nTPM: 951.1
2503 Female, age 72, unknown 1009.6
2584 Male, age 75, left hemisphere 980.2
2769 Male, age 72, unknown 964.4
2227 Male, age 72, unknown 963.1
2588 Male, age 74, left hemisphere 959.6
1865 Male, age 51, unknown 956.3
1904 Male, age 53, unknown 950.3
1821 Female, age 72, unknown 947.9
2785 Male, age 18, unknown 932.6
2725 Female, age 75, unknown 930.8
1954 Female, age 42, unknown 930.3
2823 Male, age 76, right hemisphere 888.6
Substantia nigra
nTPM: 945.3
2665 Male, age 74, both hemispheres 999.4
1851 Male, age 51, unknown 973.1
2590 Female, age 75, unknown 968.4
2699 Male, age 18, unknown 964.7
2583 Male, age 75, right hemisphere 957.4
1916 Female, age 42, unknown 941.9
2241 Male, age 72, unknown 925.8
2409 Female, age 72, unknown 912.3
1889 Female, age 72, unknown 909.8
1941 Male, age 53, unknown 900.7
Superior colliculus
nTPM: 931.5
2664 Male, age 75, both hemispheres 965.8
2587 Male, age 74, left hemisphere 959.8
1995 Male, age 72, unknown 947.1
1796 Male, age 53, unknown 942.7
2668 Female, age 75, unknown 937.7
1839 Male, age 51, unknown 931.3
1913 Female, age 42, unknown 919.8
2261 Male, age 18, unknown 913.9
1895 Male, age 76, right hemisphere 898.1
2087 Female, age 72, unknown 898.1
Ventral tegmental area
nTPM: 932.8
1915 Female, age 42, unknown 960.9
2223 Female, age 72, unknown 937.9
1942 Male, age 51, unknown 936.5
2410 Female, age 72, unknown 935.9
2021 Male, age 53, unknown 928.2
2218 Male, age 76, both hemispheres 897.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1331.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1331.0
Samples: 139

Max nTPM: 3781.6
Min nTPM: 641.8
Std nTPM: 421.4
Median nTPM: 1247.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3781.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2626.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2458.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2330.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2227.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2039.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2031.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1963.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1943.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1904.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1887.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.6
FF:10158-103A5 76 years, female 77.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 241.0
Pig sample Sample description nTPM
Midbrain
nTPM: 221.2
Samples: 4

Max nTPM: 292.7
Min nTPM: 157.2
Sample A Female 292.7
Sample B Female 232.4
Sample C Male 202.3
Sample D Male 157.2
Periaqueductal gray
nTPM: 173.0
Samples: 3

Max nTPM: 196.0
Min nTPM: 146.3
Sample B Female 196.0
Sample C Male 176.8
Sample D Male 146.3
Substantia nigra
nTPM: 212.9
Samples: 4

Max nTPM: 245.7
Min nTPM: 181.3
Sample A Female 245.7
Sample B Female 236.5
Sample C Male 188.0
Sample D Male 181.3
Superior colliculi
nTPM: 241.0
Samples: 4

Max nTPM: 322.7
Min nTPM: 196.3
Sample A Female 243.2
Sample B Female 322.7
Sample C Male 201.8
Sample D Male 196.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 904.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 904.8
Samples: 4

Max nTPM: 975.2
Min nTPM: 837.7
Sample A Male 975.2
Sample B Male 907.0
Sample C Female 837.7
Sample D Female 899.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.