MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:140.5 nTPM
HPA:140.5 nTPM
GTEx:135.9 nTPM
FANTOM5:183.0 Scaled Tags Per Million
Pig:132.4 nTPM
Mouse:128.0 nTPM
Allen mouse:21.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 140.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.8
1870 Female, age 42, unknown 142.9
1833 Male, age 53, unknown 135.0
1827 Male, age 72, unknown 133.7
1830 Male, age 51, unknown 132.6
2411 Female, age 72, unknown 130.6
2828 Female, age 72, unknown 129.3
2666 Male, age 74, left hemisphere 128.5
2019 Male, age 18, unknown 125.6
2219 Male, age 76, both hemispheres 124.9
2586 Male, age 75, left hemisphere 115.2
Dorsal raphe nucleus
nTPM: 135.2
2016 Female, age 72, unknown 139.2
1828 Male, age 53, unknown 137.2
2298 Female, age 72, unknown 135.7
2047 Male, age 72, unknown 132.7
2750 Male, age 76, both hemispheres 131.3
Inferior colliculus
nTPM: 129.1
2849 Male, age 72, unknown 132.2
1890 Male, age 53, unknown 129.5
1848 Female, age 42, unknown 127.5
2097 Female, age 72, unknown 127.2
Median raphe nucleus
nTPM: 140.5
2220 Male, age 76, midline 140.5
Pedunculopontine tegmental nucleus
nTPM: 135.7
2334 Male, age 80, both hemispheres 141.7
2338 Male, age 61, both hemispheres 136.5
1921 Female, age 85, both hemispheres 129.1
Periaquaductal grey, anterior
nTPM: 133.5
1947 Male, age 18, unknown 140.0
2502 Female, age 75, unknown 137.8
1795 Male, age 51, unknown 122.7
Periaquaductal grey, dorsal
nTPM: 133.5
2850 Male, age 76, both hemispheres 145.2
1831 Male, age 72, unknown 134.5
1840 Male, age 53, unknown 132.2
2464 Female, age 72, unknown 122.1
Periaquaductal grey, lateral
nTPM: 134.4
2140 Male, age 76, both hemispheres 139.4
2053 Male, age 18, unknown 136.4
2272 Male, age 74, both hemispheres 127.5
Pretectal area
nTPM: 130.9
2224 Female, age 72, unknown 136.1
2407 Male, age 75, both hemispheres 135.9
1815 Male, age 53, unknown 134.0
2667 Female, age 75, unknown 133.0
2825 Male, age 18, unknown 132.7
2273 Male, age 74, both hemispheres 131.3
1817 Female, age 42, unknown 130.3
1816 Male, age 51, unknown 127.8
2007 Male, age 72, unknown 127.0
1944 Female, age 72, unknown 125.9
2316 Male, age 76, right hemisphere 125.7
Red nucleus
nTPM: 139.2
1821 Female, age 72, unknown 155.5
2503 Female, age 72, unknown 145.5
1954 Female, age 42, unknown 144.1
1865 Male, age 51, unknown 143.9
2725 Female, age 75, unknown 143.6
1904 Male, age 53, unknown 141.3
2227 Male, age 72, unknown 136.4
2823 Male, age 76, right hemisphere 135.9
2769 Male, age 72, unknown 135.6
2588 Male, age 74, left hemisphere 130.9
2584 Male, age 75, left hemisphere 128.5
2785 Male, age 18, unknown 128.4
Substantia nigra
nTPM: 138.8
2409 Female, age 72, unknown 149.6
2699 Male, age 18, unknown 148.0
1916 Female, age 42, unknown 145.3
1851 Male, age 51, unknown 142.0
1889 Female, age 72, unknown 138.5
2590 Female, age 75, unknown 136.2
1941 Male, age 53, unknown 135.8
2241 Male, age 72, unknown 135.2
2665 Male, age 74, both hemispheres 130.0
2583 Male, age 75, right hemisphere 127.1
Superior colliculus
nTPM: 131.1
2587 Male, age 74, left hemisphere 144.4
1913 Female, age 42, unknown 143.2
1995 Male, age 72, unknown 136.5
1839 Male, age 51, unknown 134.6
1895 Male, age 76, right hemisphere 127.3
2261 Male, age 18, unknown 126.5
2664 Male, age 75, both hemispheres 126.5
1796 Male, age 53, unknown 126.0
2087 Female, age 72, unknown 123.8
2668 Female, age 75, unknown 122.5
Ventral tegmental area
nTPM: 135.7
2223 Female, age 72, unknown 141.4
1915 Female, age 42, unknown 139.5
2218 Male, age 76, both hemispheres 135.3
1942 Male, age 51, unknown 135.1
2410 Female, age 72, unknown 132.5
2021 Male, age 53, unknown 130.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 135.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 135.9
Samples: 139

Max nTPM: 251.5
Min nTPM: 83.0
Std nTPM: 31.8
Median nTPM: 131.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 251.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 248.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 241.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 219.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 214.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 201.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 200.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 183.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 181.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 179.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 177.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.0
FF:10158-103A5 76 years, female 183.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 132.4
Pig sample Sample description nTPM
Midbrain
nTPM: 132.5
Samples: 4

Max nTPM: 178.1
Min nTPM: 112.0
Sample A Female 178.1
Sample B Female 124.9
Sample C Male 114.9
Sample D Male 112.0
Periaqueductal gray
nTPM: 113.2
Samples: 3

Max nTPM: 115.6
Min nTPM: 108.9
Sample B Female 115.0
Sample C Male 115.6
Sample D Male 108.9
Substantia nigra
nTPM: 122.8
Samples: 4

Max nTPM: 133.4
Min nTPM: 106.8
Sample A Female 133.4
Sample B Female 106.8
Sample C Male 123.1
Sample D Male 127.9
Superior colliculi
nTPM: 128.1
Samples: 4

Max nTPM: 141.1
Min nTPM: 105.4
Sample A Female 141.1
Sample B Female 105.4
Sample C Male 134.8
Sample D Male 131.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.0
Samples: 4

Max nTPM: 132.9
Min nTPM: 123.1
Sample A Male 123.4
Sample B Male 123.1
Sample C Female 132.5
Sample D Female 132.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.1
532638 Antisense, RP_040810_02_H01, Mouse strain C57BL/6J (56 days, male) 21.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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