MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA:16.4 nTPM
GTEx:12.4 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:18.3 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.7
2019 Male, age 18, unknown 18.2
2586 Male, age 75, left hemisphere 17.7
2411 Female, age 72, unknown 16.2
1827 Male, age 72, unknown 16.1
1870 Female, age 42, unknown 15.5
1830 Male, age 51, unknown 15.1
1833 Male, age 53, unknown 15.1
2828 Female, age 72, unknown 15.0
2666 Male, age 74, left hemisphere 14.5
2219 Male, age 76, both hemispheres 13.8
Dorsal raphe nucleus
nTPM: 14.0
2750 Male, age 76, both hemispheres 16.5
1828 Male, age 53, unknown 14.0
2298 Female, age 72, unknown 13.9
2016 Female, age 72, unknown 12.8
2047 Male, age 72, unknown 12.6
Inferior colliculus
nTPM: 14.6
1848 Female, age 42, unknown 14.8
1890 Male, age 53, unknown 14.6
2097 Female, age 72, unknown 14.5
2849 Male, age 72, unknown 14.4
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Pedunculopontine tegmental nucleus
nTPM: 14.3
1921 Female, age 85, both hemispheres 16.0
2334 Male, age 80, both hemispheres 13.7
2338 Male, age 61, both hemispheres 13.1
Periaquaductal grey, anterior
nTPM: 15.4
2502 Female, age 75, unknown 15.8
1947 Male, age 18, unknown 15.6
1795 Male, age 51, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 13.4
2464 Female, age 72, unknown 14.8
1840 Male, age 53, unknown 14.0
1831 Male, age 72, unknown 13.4
2850 Male, age 76, both hemispheres 11.6
Periaquaductal grey, lateral
nTPM: 14.5
2053 Male, age 18, unknown 14.8
2272 Male, age 74, both hemispheres 14.5
2140 Male, age 76, both hemispheres 14.3
Pretectal area
nTPM: 16.2
2407 Male, age 75, both hemispheres 19.5
2007 Male, age 72, unknown 17.6
1816 Male, age 51, unknown 17.1
1944 Female, age 72, unknown 17.1
2667 Female, age 75, unknown 16.5
1815 Male, age 53, unknown 16.4
1817 Female, age 42, unknown 16.4
2316 Male, age 76, right hemisphere 16.1
2273 Male, age 74, both hemispheres 14.3
2825 Male, age 18, unknown 13.8
2224 Female, age 72, unknown 13.2
Red nucleus
nTPM: 16.3
2584 Male, age 75, left hemisphere 18.9
2785 Male, age 18, unknown 18.1
2588 Male, age 74, left hemisphere 17.8
1865 Male, age 51, unknown 16.7
1904 Male, age 53, unknown 16.5
2227 Male, age 72, unknown 16.4
2503 Female, age 72, unknown 16.0
2769 Male, age 72, unknown 15.9
2823 Male, age 76, right hemisphere 15.7
1821 Female, age 72, unknown 15.2
1954 Female, age 42, unknown 14.3
2725 Female, age 75, unknown 13.7
Substantia nigra
nTPM: 14.4
2583 Male, age 75, right hemisphere 17.2
2590 Female, age 75, unknown 16.7
1889 Female, age 72, unknown 15.6
1851 Male, age 51, unknown 14.5
2665 Male, age 74, both hemispheres 13.9
2241 Male, age 72, unknown 13.7
2409 Female, age 72, unknown 13.4
1941 Male, age 53, unknown 13.2
1916 Female, age 42, unknown 13.0
2699 Male, age 18, unknown 12.6
Superior colliculus
nTPM: 16.4
1913 Female, age 42, unknown 19.2
1895 Male, age 76, right hemisphere 17.2
1995 Male, age 72, unknown 17.0
1796 Male, age 53, unknown 16.9
2087 Female, age 72, unknown 16.3
2261 Male, age 18, unknown 16.3
2668 Female, age 75, unknown 15.8
1839 Male, age 51, unknown 15.7
2664 Male, age 75, both hemispheres 14.9
2587 Male, age 74, left hemisphere 14.8
Ventral tegmental area
nTPM: 14.6
2223 Female, age 72, unknown 15.2
2410 Female, age 72, unknown 15.0
1942 Male, age 51, unknown 14.6
2021 Male, age 53, unknown 14.4
2218 Male, age 76, both hemispheres 14.4
1915 Female, age 42, unknown 13.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.4
Samples: 139

Max nTPM: 23.3
Min nTPM: 6.0
Std nTPM: 2.6
Median nTPM: 12.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 18.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 17.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 17.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 16.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 16.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.8
FF:10158-103A5 76 years, female 19.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.9
Pig sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.5
Sample A Female 9.7
Sample B Female 6.5
Sample C Male 8.1
Sample D Male 7.1
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 7.8
Min nTPM: 7.3
Sample B Female 7.3
Sample C Male 7.8
Sample D Male 7.4
Substantia nigra
nTPM: 7.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 6.7
Sample C Male 8.0
Sample D Male 8.1
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 7.4
Sample C Male 7.5
Sample D Male 8.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 19.6
Min nTPM: 17.4
Sample A Male 17.4
Sample B Male 17.5
Sample C Female 18.9
Sample D Female 19.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
67815942 Antisense, RP_040920_02_B06, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.