MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA:24.5 nTPM
GTEx:16.8 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:60.9 nTPM
Mouse:114.3 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2586 Male, age 75, left hemisphere 26.2
2828 Female, age 72, unknown 23.9
1833 Male, age 53, unknown 23.7
2019 Male, age 18, unknown 23.3
1870 Female, age 42, unknown 23.1
2411 Female, age 72, unknown 22.7
1830 Male, age 51, unknown 22.3
2666 Male, age 74, left hemisphere 21.7
1827 Male, age 72, unknown 20.2
2219 Male, age 76, both hemispheres 20.0
Dorsal raphe nucleus
nTPM: 24.2
2016 Female, age 72, unknown 26.7
1828 Male, age 53, unknown 25.0
2047 Male, age 72, unknown 24.5
2298 Female, age 72, unknown 22.5
2750 Male, age 76, both hemispheres 22.1
Inferior colliculus
nTPM: 21.3
1848 Female, age 42, unknown 22.6
2849 Male, age 72, unknown 22.3
1890 Male, age 53, unknown 21.9
2097 Female, age 72, unknown 18.6
Median raphe nucleus
nTPM: 22.1
2220 Male, age 76, midline 22.1
Pedunculopontine tegmental nucleus
nTPM: 21.7
2338 Male, age 61, both hemispheres 22.6
2334 Male, age 80, both hemispheres 21.3
1921 Female, age 85, both hemispheres 21.1
Periaquaductal grey, anterior
nTPM: 21.3
1795 Male, age 51, unknown 23.8
2502 Female, age 75, unknown 21.0
1947 Male, age 18, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 24.1
2850 Male, age 76, both hemispheres 27.7
2464 Female, age 72, unknown 24.4
1840 Male, age 53, unknown 22.3
1831 Male, age 72, unknown 22.2
Periaquaductal grey, lateral
nTPM: 24.5
2140 Male, age 76, both hemispheres 29.1
2053 Male, age 18, unknown 22.5
2272 Male, age 74, both hemispheres 22.0
Pretectal area
nTPM: 21.6
2224 Female, age 72, unknown 25.0
2407 Male, age 75, both hemispheres 23.8
2273 Male, age 74, both hemispheres 23.4
2825 Male, age 18, unknown 23.4
2667 Female, age 75, unknown 22.8
1817 Female, age 42, unknown 21.0
1815 Male, age 53, unknown 20.9
2316 Male, age 76, right hemisphere 20.3
2007 Male, age 72, unknown 19.9
1944 Female, age 72, unknown 19.1
1816 Male, age 51, unknown 18.1
Red nucleus
nTPM: 21.5
2227 Male, age 72, unknown 23.0
1865 Male, age 51, unknown 22.5
1904 Male, age 53, unknown 22.5
2785 Male, age 18, unknown 22.3
1954 Female, age 42, unknown 22.1
1821 Female, age 72, unknown 21.7
2725 Female, age 75, unknown 21.2
2584 Male, age 75, left hemisphere 21.0
2769 Male, age 72, unknown 20.9
2823 Male, age 76, right hemisphere 20.9
2503 Female, age 72, unknown 20.1
2588 Male, age 74, left hemisphere 19.9
Substantia nigra
nTPM: 22.0
2699 Male, age 18, unknown 26.1
2583 Male, age 75, right hemisphere 22.9
1851 Male, age 51, unknown 22.8
2590 Female, age 75, unknown 22.6
1889 Female, age 72, unknown 21.8
1916 Female, age 42, unknown 21.4
2241 Male, age 72, unknown 21.3
1941 Male, age 53, unknown 20.9
2409 Female, age 72, unknown 20.7
2665 Male, age 74, both hemispheres 19.8
Superior colliculus
nTPM: 22.4
1995 Male, age 72, unknown 27.2
2664 Male, age 75, both hemispheres 25.1
1913 Female, age 42, unknown 23.8
1839 Male, age 51, unknown 22.5
2087 Female, age 72, unknown 22.0
1796 Male, age 53, unknown 21.9
2587 Male, age 74, left hemisphere 21.1
2668 Female, age 75, unknown 20.7
1895 Male, age 76, right hemisphere 20.1
2261 Male, age 18, unknown 19.4
Ventral tegmental area
nTPM: 22.8
2223 Female, age 72, unknown 23.6
2410 Female, age 72, unknown 23.1
2021 Male, age 53, unknown 22.8
2218 Male, age 76, both hemispheres 22.4
1915 Female, age 42, unknown 22.3
1942 Male, age 51, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.8
Samples: 139

Max nTPM: 71.0
Min nTPM: 3.8
Std nTPM: 8.6
Median nTPM: 14.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 71.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 46.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 45.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 37.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 34.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 30.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 28.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 27.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.9
FF:10158-103A5 76 years, female 37.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.9
Pig sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 99.5
Min nTPM: 40.5
Sample A Female 99.5
Sample B Female 62.1
Sample C Male 41.7
Sample D Male 40.5
Periaqueductal gray
nTPM: 57.2
Samples: 3

Max nTPM: 64.2
Min nTPM: 51.2
Sample B Female 56.3
Sample C Male 64.2
Sample D Male 51.2
Substantia nigra
nTPM: 60.3
Samples: 4

Max nTPM: 67.2
Min nTPM: 50.4
Sample A Female 67.2
Sample B Female 50.4
Sample C Male 59.0
Sample D Male 64.6
Superior colliculi
nTPM: 49.6
Samples: 4

Max nTPM: 61.4
Min nTPM: 41.2
Sample A Female 61.4
Sample B Female 41.2
Sample C Male 44.0
Sample D Male 51.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.3
Samples: 4

Max nTPM: 121.7
Min nTPM: 106.3
Sample A Male 112.2
Sample B Male 106.3
Sample C Female 117.1
Sample D Female 121.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
638713 Antisense, RP_040831_02_D01, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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