MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:18.2 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:38.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.1
1833 Male, age 53, unknown 20.4
2586 Male, age 75, left hemisphere 20.1
2019 Male, age 18, unknown 20.0
2411 Female, age 72, unknown 20.0
2828 Female, age 72, unknown 19.3
1827 Male, age 72, unknown 19.0
2666 Male, age 74, left hemisphere 18.8
1870 Female, age 42, unknown 18.4
2219 Male, age 76, both hemispheres 17.8
1830 Male, age 51, unknown 17.6
Dorsal raphe nucleus
nTPM: 21.0
2047 Male, age 72, unknown 22.4
2298 Female, age 72, unknown 22.4
2016 Female, age 72, unknown 20.9
1828 Male, age 53, unknown 20.7
2750 Male, age 76, both hemispheres 18.6
Inferior colliculus
nTPM: 18.2
2849 Male, age 72, unknown 18.9
2097 Female, age 72, unknown 18.3
1848 Female, age 42, unknown 18.2
1890 Male, age 53, unknown 17.4
Median raphe nucleus
nTPM: 22.2
2220 Male, age 76, midline 22.2
Pedunculopontine tegmental nucleus
nTPM: 20.2
2334 Male, age 80, both hemispheres 21.0
2338 Male, age 61, both hemispheres 19.8
1921 Female, age 85, both hemispheres 19.7
Periaquaductal grey, anterior
nTPM: 19.3
1947 Male, age 18, unknown 19.9
2502 Female, age 75, unknown 19.4
1795 Male, age 51, unknown 18.6
Periaquaductal grey, dorsal
nTPM: 19.7
2850 Male, age 76, both hemispheres 22.8
1831 Male, age 72, unknown 19.8
1840 Male, age 53, unknown 18.2
2464 Female, age 72, unknown 18.0
Periaquaductal grey, lateral
nTPM: 21.1
2272 Male, age 74, both hemispheres 23.5
2140 Male, age 76, both hemispheres 20.8
2053 Male, age 18, unknown 19.0
Pretectal area
nTPM: 20.5
1817 Female, age 42, unknown 22.7
2273 Male, age 74, both hemispheres 22.6
2667 Female, age 75, unknown 21.6
1815 Male, age 53, unknown 21.1
1816 Male, age 51, unknown 20.8
2825 Male, age 18, unknown 20.4
2007 Male, age 72, unknown 19.9
1944 Female, age 72, unknown 19.6
2224 Female, age 72, unknown 19.6
2316 Male, age 76, right hemisphere 19.5
2407 Male, age 75, both hemispheres 17.5
Red nucleus
nTPM: 19.4
1865 Male, age 51, unknown 21.8
1821 Female, age 72, unknown 21.5
2725 Female, age 75, unknown 21.5
1954 Female, age 42, unknown 20.3
2785 Male, age 18, unknown 19.6
1904 Male, age 53, unknown 19.4
2503 Female, age 72, unknown 19.1
2227 Male, age 72, unknown 18.8
2823 Male, age 76, right hemisphere 18.6
2588 Male, age 74, left hemisphere 18.0
2769 Male, age 72, unknown 17.3
2584 Male, age 75, left hemisphere 16.4
Substantia nigra
nTPM: 22.1
2409 Female, age 72, unknown 32.7
1916 Female, age 42, unknown 25.0
1851 Male, age 51, unknown 22.5
2699 Male, age 18, unknown 22.0
2241 Male, age 72, unknown 21.5
1941 Male, age 53, unknown 20.3
2665 Male, age 74, both hemispheres 20.3
1889 Female, age 72, unknown 20.1
2583 Male, age 75, right hemisphere 18.6
2590 Female, age 75, unknown 17.6
Superior colliculus
nTPM: 19.3
1796 Male, age 53, unknown 21.1
1913 Female, age 42, unknown 20.2
1995 Male, age 72, unknown 20.2
2668 Female, age 75, unknown 20.0
1895 Male, age 76, right hemisphere 19.2
2587 Male, age 74, left hemisphere 19.2
2261 Male, age 18, unknown 19.0
1839 Male, age 51, unknown 18.5
2087 Female, age 72, unknown 18.1
2664 Male, age 75, both hemispheres 17.5
Ventral tegmental area
nTPM: 20.3
1915 Female, age 42, unknown 21.6
2218 Male, age 76, both hemispheres 21.6
2021 Male, age 53, unknown 20.3
2410 Female, age 72, unknown 20.1
1942 Male, age 51, unknown 19.9
2223 Female, age 72, unknown 18.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.2
Samples: 139

Max nTPM: 49.0
Min nTPM: 9.6
Std nTPM: 5.5
Median nTPM: 17.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 49.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 40.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 36.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 33.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 30.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 29.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 25.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 25.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 25.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.6
FF:10158-103A5 76 years, female 19.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 26.4
Min nTPM: 20.1
Sample A Female 26.4
Sample B Female 20.1
Sample C Male 23.3
Sample D Male 22.8
Periaqueductal gray
nTPM: 20.9
Samples: 3

Max nTPM: 22.4
Min nTPM: 19.8
Sample B Female 20.5
Sample C Male 22.4
Sample D Male 19.8
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 24.6
Min nTPM: 19.6
Sample A Female 24.1
Sample B Female 19.6
Sample C Male 24.6
Sample D Male 20.3
Superior colliculi
nTPM: 22.2
Samples: 4

Max nTPM: 23.1
Min nTPM: 20.9
Sample A Female 22.8
Sample B Female 20.9
Sample C Male 21.8
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.8
Samples: 4

Max nTPM: 40.6
Min nTPM: 36.9
Sample A Male 39.0
Sample B Male 36.9
Sample C Female 38.5
Sample D Female 40.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68161465 Antisense, RP_041122_01_D06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.