BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.3 nTPM
HPA:71.3 nTPM
GTEx:97.5 nTPM
FANTOM5:237.7 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:66.1 nTPM
Allen mouse:6.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 71.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.3
1857 Female, age 85, left hemisphere 113.2
1854 Male, age 80, left hemisphere 85.6
2290 Female, age 72, unknown 82.0
2289 Male, age 61, right hemisphere 50.8
1781 Male, age 74, unknown 48.6
2846 Female, age 79, unknown 46.7
2288 Male, age 75, left hemisphere 39.0
2481 Female, age 94, left hemisphere 24.1
Claustrum
nTPM: 6.6
2196 Female, age 79, unknown 21.1
2568 Male, age 61, both hemispheres 9.3
2198 Male, age 80, both hemispheres 6.9
2392 Female, age 94, both hemispheres 6.8
2284 Female, age 91, both hemispheres 6.4
2491 Male, age 75, both hemispheres 3.6
1956 Male, age 74, unknown 2.6
2645 Female, age 72, unknown 2.0
2292 Female, age 85, both hemispheres 1.1
Globus pallidus, externus
nTPM: 9.8
1996 Male, age 80, right hemisphere 24.0
2395 Male, age 75, both hemispheres 8.6
2646 Male, age 61, right hemisphere 6.5
2567 Female, age 72, unknown 5.2
2772 Female, age 79, unknown 4.7
Globus pallidus, internus
nTPM: 14.0
2037 Male, age 80, right hemisphere 25.4
2483 Female, age 94, right hemisphere 20.9
1818 Male, age 74, unknown 14.2
2287 Male, age 75, right hemisphere 13.4
2566 Female, age 72, unknown 9.3
2778 Female, age 91, both hemispheres 9.0
2111 Female, age 85, right hemisphere 5.7
Nucleus accumbens
nTPM: 71.3
1856 Female, age 91, right hemisphere 124.4
2824 Male, age 61, right hemisphere 102.8
1806 Female, age 85, left hemisphere 102.5
1783 Male, age 74, unknown 99.5
2698 Female, age 72, unknown 61.3
2286 Male, age 75, left hemisphere 46.9
2391 Female, age 94, left hemisphere 20.3
2732 Male, age 80, right hemisphere 12.7
Nucleus basalis of Meynert
nTPM: 37.2
2393 Male, age 80, right hemisphere 72.1
2484 Female, age 94, left hemisphere 35.9
2821 Male, age 75, both hemispheres 28.4
2569 Male, age 61, both hemispheres 12.6
Nucleus of the diagonal band
nTPM: 4.4
1812 Female, age 91, both hemispheres 7.2
2195 Female, age 85, both hemispheres 5.1
2775 Male, age 80, right hemisphere 4.5
2029 Male, age 61, right hemisphere 3.0
1979 Male, age 74, unknown 2.3
Olfactory tubercle
nTPM: 4.1
2487 Female, age 94, left hemisphere 4.6
1846 Male, age 80, right hemisphere 4.4
1998 Female, age 91, both hemispheres 4.1
2856 Male, age 75, right hemisphere 3.1
Putamen
nTPM: 61.5
1838 Male, age 80, right hemisphere 118.0
1937 Female, age 91, right hemisphere 113.7
1829 Male, age 74, unknown 56.2
2466 Female, age 79, unknown 47.5
2489 Female, age 72, unknown 35.4
2482 Female, age 94, left hemisphere 32.7
2647 Male, age 75, left hemisphere 26.8
Septal nuclei
nTPM: 5.1
2394 Male, age 61, left hemisphere 13.3
1960 Male, age 74, unknown 5.8
2031 Female, age 72, unknown 4.5
2009 Female, age 91, both hemispheres 4.1
2629 Female, age 94, right hemisphere 3.7
2059 Female, age 85, both hemispheres 3.1
2199 Male, age 80, right hemisphere 1.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 97.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 72.5
Samples: 246

Max nTPM: 226.9
Min nTPM: 1.9
Std nTPM: 49.8
Median nTPM: 66.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 226.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 212.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 208.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 202.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 189.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 186.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 177.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 174.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 172.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 171.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 170.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 97.5
Samples: 246

Max nTPM: 285.9
Min nTPM: 0.9
Std nTPM: 67.2
Median nTPM: 92.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 285.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 272.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 251.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 245.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 242.3
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 238.5
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 238.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 237.4
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 228.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 227.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 225.7
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Brain - Putamen (basal ganglia)
Average nTPM: 69.2
Samples: 205

Max nTPM: 220.5
Min nTPM: 2.6
Std nTPM: 53.4
Median nTPM: 56.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 220.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 216.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 213.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 213.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 198.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 185.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 180.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 176.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 176.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 174.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 169.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 237.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 213.8
FF:10164-103B2 76 years, female 213.8
Globus pallidus
Scaled Tags Per Million: 43.8
FF:10175-103C4 60 years, female 76.5
FF:10161-103A8 76 years, female 11.2
Nucleus accumbens
Scaled Tags Per Million: 114.3
FF:10037-101F1 23-56 years, mixed 114.3
Putamen
Scaled Tags Per Million: 237.7
FF:10176-103C5 60 years, female 237.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.8
Pig sample Sample description nTPM
Caudate
nTPM: 30.5
Samples: 4

Max nTPM: 39.5
Min nTPM: 23.3
Sample A Female 29.2
Sample B Female 23.3
Sample C Male 39.5
Sample D Male 30.0
Putamen
nTPM: 50.9
Samples: 4

Max nTPM: 104.0
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 43.5
Sample C Male 104.0
Sample D Male 41.8
Septum
nTPM: 7.9
Samples: 4

Max nTPM: 9.8
Min nTPM: 4.7
Sample A Female 8.3
Sample B Female 8.6
Sample C Male 4.7
Sample D Male 9.8
Ventral pallidum
nTPM: 13.8
Samples: 4

Max nTPM: 19.0
Min nTPM: 5.7
Sample A Female 15.5
Sample B Female 19.0
Sample C Male 5.7
Sample D Male 14.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 66.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 66.1
Samples: 4

Max nTPM: 77.5
Min nTPM: 53.4
Sample A Male 77.5
Sample B Male 77.5
Sample C Female 56.1
Sample D Female 53.4
Septum
nTPM: 9.2
Samples: 4

Max nTPM: 11.0
Min nTPM: 6.7
Sample A Male 11.0
Sample B Male 6.7
Sample C Female 8.9
Sample D Female 10.3
Ventral forebrain
nTPM: 17.7
Samples: 4

Max nTPM: 18.4
Min nTPM: 16.3
Sample A Male 18.2
Sample B Male 18.0
Sample C Female 18.4
Sample D Female 16.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.0
75990683 Antisense, RP_060608_01_F01, Mouse strain C57BL/6J (56 days, male) 6.1
71717614 Antisense, RP_050623_02_G08, Mouse strain C57BL/6J (56 days, male) 5.9
Pallidum
Expression energy: 0.9
75990683 Antisense, RP_060608_01_F01, Mouse strain C57BL/6J (56 days, male) 1.0
71717614 Antisense, RP_050623_02_G08, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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