MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:98.4 nTPM
HPA:98.4 nTPM
GTEx:108.3 nTPM
FANTOM5:82.1 Scaled Tags Per Million
Pig:53.5 nTPM
Mouse:80.4 nTPM
Allen mouse:13.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.1
1827 Male, age 72, unknown 94.9
2411 Female, age 72, unknown 93.1
1870 Female, age 42, unknown 90.8
2019 Male, age 18, unknown 90.0
2219 Male, age 76, both hemispheres 90.0
2666 Male, age 74, left hemisphere 86.7
1833 Male, age 53, unknown 85.3
1830 Male, age 51, unknown 85.1
2828 Female, age 72, unknown 84.8
2586 Male, age 75, left hemisphere 79.8
Dorsal raphe nucleus
nTPM: 91.8
2298 Female, age 72, unknown 97.1
2047 Male, age 72, unknown 94.5
2750 Male, age 76, both hemispheres 93.8
1828 Male, age 53, unknown 88.3
2016 Female, age 72, unknown 85.1
Inferior colliculus
nTPM: 90.5
2097 Female, age 72, unknown 95.8
1848 Female, age 42, unknown 90.3
1890 Male, age 53, unknown 88.4
2849 Male, age 72, unknown 87.5
Median raphe nucleus
nTPM: 98.4
2220 Male, age 76, midline 98.4
Pedunculopontine tegmental nucleus
nTPM: 91.5
2334 Male, age 80, both hemispheres 95.9
1921 Female, age 85, both hemispheres 92.0
2338 Male, age 61, both hemispheres 86.5
Periaquaductal grey, anterior
nTPM: 91.7
1947 Male, age 18, unknown 94.9
2502 Female, age 75, unknown 90.6
1795 Male, age 51, unknown 89.6
Periaquaductal grey, dorsal
nTPM: 87.3
1840 Male, age 53, unknown 90.9
2850 Male, age 76, both hemispheres 87.5
2464 Female, age 72, unknown 85.9
1831 Male, age 72, unknown 84.7
Periaquaductal grey, lateral
nTPM: 87.7
2272 Male, age 74, both hemispheres 92.7
2053 Male, age 18, unknown 87.0
2140 Male, age 76, both hemispheres 83.3
Pretectal area
nTPM: 93.1
1944 Female, age 72, unknown 102.7
1816 Male, age 51, unknown 102.2
1817 Female, age 42, unknown 96.7
2007 Male, age 72, unknown 95.9
2273 Male, age 74, both hemispheres 95.4
2667 Female, age 75, unknown 94.6
1815 Male, age 53, unknown 93.1
2224 Female, age 72, unknown 93.0
2825 Male, age 18, unknown 87.3
2407 Male, age 75, both hemispheres 83.0
2316 Male, age 76, right hemisphere 79.6
Red nucleus
nTPM: 86.5
1821 Female, age 72, unknown 94.4
2725 Female, age 75, unknown 92.6
1954 Female, age 42, unknown 89.9
2785 Male, age 18, unknown 87.3
2503 Female, age 72, unknown 85.7
2584 Male, age 75, left hemisphere 85.1
2588 Male, age 74, left hemisphere 84.6
2227 Male, age 72, unknown 84.4
1904 Male, age 53, unknown 84.2
1865 Male, age 51, unknown 84.1
2823 Male, age 76, right hemisphere 83.0
2769 Male, age 72, unknown 82.7
Substantia nigra
nTPM: 96.2
1916 Female, age 42, unknown 109.7
2241 Male, age 72, unknown 106.9
1941 Male, age 53, unknown 104.0
1851 Male, age 51, unknown 99.7
1889 Female, age 72, unknown 99.1
2409 Female, age 72, unknown 95.3
2699 Male, age 18, unknown 88.5
2590 Female, age 75, unknown 87.7
2665 Male, age 74, both hemispheres 86.1
2583 Male, age 75, right hemisphere 84.7
Superior colliculus
nTPM: 88.1
2087 Female, age 72, unknown 95.6
2261 Male, age 18, unknown 93.8
1796 Male, age 53, unknown 92.0
2587 Male, age 74, left hemisphere 90.5
1895 Male, age 76, right hemisphere 89.2
2668 Female, age 75, unknown 87.8
1839 Male, age 51, unknown 87.0
2664 Male, age 75, both hemispheres 82.9
1913 Female, age 42, unknown 82.7
1995 Male, age 72, unknown 79.7
Ventral tegmental area
nTPM: 94.2
1915 Female, age 42, unknown 99.7
2218 Male, age 76, both hemispheres 99.0
2410 Female, age 72, unknown 95.6
2223 Female, age 72, unknown 92.2
1942 Male, age 51, unknown 90.2
2021 Male, age 53, unknown 88.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.3
Samples: 139

Max nTPM: 211.4
Min nTPM: 49.6
Std nTPM: 30.0
Median nTPM: 103.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 211.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 208.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 203.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 201.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 199.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 170.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 167.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 164.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 157.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 157.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 151.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.1
FF:10158-103A5 76 years, female 82.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.5
Pig sample Sample description nTPM
Midbrain
nTPM: 48.1
Samples: 4

Max nTPM: 59.9
Min nTPM: 36.4
Sample A Female 36.4
Sample B Female 45.7
Sample C Male 59.9
Sample D Male 50.4
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 49.6
Min nTPM: 35.1
Sample B Female 40.3
Sample C Male 49.6
Sample D Male 35.1
Substantia nigra
nTPM: 47.7
Samples: 4

Max nTPM: 76.3
Min nTPM: 21.3
Sample A Female 76.3
Sample B Female 40.2
Sample C Male 53.0
Sample D Male 21.3
Superior colliculi
nTPM: 53.5
Samples: 4

Max nTPM: 65.9
Min nTPM: 42.4
Sample A Female 65.9
Sample B Female 42.4
Sample C Male 60.4
Sample D Male 45.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 80.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.4
Samples: 4

Max nTPM: 83.1
Min nTPM: 77.2
Sample A Male 77.2
Sample B Male 81.4
Sample C Female 83.1
Sample D Female 80.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
74047915 Antisense, RP_051214_02_C12, Mouse strain C57BL/6J (56 days, male) 13.8
67787352 Antisense, RP_040920_01_A06, Mouse strain C57BL/6J (56 days, male) 12.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.