MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.3 nTPM
HPA:52.3 nTPM
GTEx:51.6 nTPM
FANTOM5:47.1 Scaled Tags Per Million
Pig:55.7 nTPM
Mouse:24.7 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.0
2411 Female, age 72, unknown 52.9
1870 Female, age 42, unknown 51.6
2019 Male, age 18, unknown 50.5
1827 Male, age 72, unknown 50.1
1833 Male, age 53, unknown 49.0
2828 Female, age 72, unknown 49.0
1830 Male, age 51, unknown 48.7
2666 Male, age 74, left hemisphere 47.9
2219 Male, age 76, both hemispheres 46.9
2586 Male, age 75, left hemisphere 43.1
Dorsal raphe nucleus
nTPM: 51.9
2298 Female, age 72, unknown 56.6
2750 Male, age 76, both hemispheres 52.3
1828 Male, age 53, unknown 51.5
2047 Male, age 72, unknown 49.8
2016 Female, age 72, unknown 49.2
Inferior colliculus
nTPM: 50.1
2097 Female, age 72, unknown 53.2
1848 Female, age 42, unknown 50.2
1890 Male, age 53, unknown 49.0
2849 Male, age 72, unknown 48.2
Median raphe nucleus
nTPM: 51.0
2220 Male, age 76, midline 51.0
Pedunculopontine tegmental nucleus
nTPM: 52.3
2338 Male, age 61, both hemispheres 53.8
2334 Male, age 80, both hemispheres 52.7
1921 Female, age 85, both hemispheres 50.4
Periaquaductal grey, anterior
nTPM: 49.1
1947 Male, age 18, unknown 50.1
2502 Female, age 75, unknown 49.2
1795 Male, age 51, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 49.2
2850 Male, age 76, both hemispheres 50.9
2464 Female, age 72, unknown 48.8
1831 Male, age 72, unknown 48.7
1840 Male, age 53, unknown 48.5
Periaquaductal grey, lateral
nTPM: 48.9
2272 Male, age 74, both hemispheres 50.9
2053 Male, age 18, unknown 48.3
2140 Male, age 76, both hemispheres 47.6
Pretectal area
nTPM: 51.0
2273 Male, age 74, both hemispheres 54.4
1817 Female, age 42, unknown 53.0
2224 Female, age 72, unknown 52.7
1944 Female, age 72, unknown 52.4
1816 Male, age 51, unknown 52.1
2007 Male, age 72, unknown 51.8
2667 Female, age 75, unknown 50.6
1815 Male, age 53, unknown 50.3
2316 Male, age 76, right hemisphere 49.2
2825 Male, age 18, unknown 48.2
2407 Male, age 75, both hemispheres 46.2
Red nucleus
nTPM: 50.0
1821 Female, age 72, unknown 53.9
2823 Male, age 76, right hemisphere 51.8
2503 Female, age 72, unknown 50.8
2725 Female, age 75, unknown 50.8
1954 Female, age 42, unknown 50.5
1904 Male, age 53, unknown 50.1
2785 Male, age 18, unknown 49.9
1865 Male, age 51, unknown 49.3
2227 Male, age 72, unknown 49.3
2769 Male, age 72, unknown 49.3
2588 Male, age 74, left hemisphere 47.5
2584 Male, age 75, left hemisphere 46.9
Substantia nigra
nTPM: 50.8
2241 Male, age 72, unknown 54.7
1889 Female, age 72, unknown 54.2
1916 Female, age 42, unknown 53.8
1941 Male, age 53, unknown 52.1
1851 Male, age 51, unknown 51.8
2665 Male, age 74, both hemispheres 49.8
2699 Male, age 18, unknown 49.7
2590 Female, age 75, unknown 49.2
2583 Male, age 75, right hemisphere 47.4
2409 Female, age 72, unknown 45.3
Superior colliculus
nTPM: 48.6
1895 Male, age 76, right hemisphere 50.8
2087 Female, age 72, unknown 50.8
2261 Male, age 18, unknown 49.5
1913 Female, age 42, unknown 49.1
1796 Male, age 53, unknown 48.9
2668 Female, age 75, unknown 48.8
1839 Male, age 51, unknown 48.7
1995 Male, age 72, unknown 48.0
2587 Male, age 74, left hemisphere 47.5
2664 Male, age 75, both hemispheres 44.3
Ventral tegmental area
nTPM: 49.5
2218 Male, age 76, both hemispheres 51.4
1915 Female, age 42, unknown 50.8
2021 Male, age 53, unknown 49.1
2410 Female, age 72, unknown 48.8
1942 Male, age 51, unknown 48.7
2223 Female, age 72, unknown 48.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.6
Samples: 139

Max nTPM: 104.5
Min nTPM: 34.8
Std nTPM: 11.7
Median nTPM: 50.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 104.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 99.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 84.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 74.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 69.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 69.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 68.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.1
FF:10158-103A5 76 years, female 47.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.7
Pig sample Sample description nTPM
Midbrain
nTPM: 55.7
Samples: 4

Max nTPM: 66.8
Min nTPM: 44.8
Sample A Female 66.8
Sample B Female 60.8
Sample C Male 50.4
Sample D Male 44.8
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 53.6
Min nTPM: 46.1
Sample B Female 53.6
Sample C Male 49.3
Sample D Male 46.1
Substantia nigra
nTPM: 55.4
Samples: 4

Max nTPM: 66.7
Min nTPM: 48.2
Sample A Female 66.7
Sample B Female 55.9
Sample C Male 50.6
Sample D Male 48.2
Superior colliculi
nTPM: 54.8
Samples: 4

Max nTPM: 58.0
Min nTPM: 51.2
Sample A Female 58.0
Sample B Female 55.2
Sample C Male 54.6
Sample D Male 51.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 19.7
Sample A Male 19.7
Sample B Male 28.9
Sample C Female 26.0
Sample D Female 24.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
69817402 Antisense, RP_050510_03_C11, Mouse strain C57BL/6J (56 days, male) 9.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.