MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:139.3 nTPM
HPA:139.3 nTPM
GTEx:95.2 nTPM
FANTOM5:327.6 Scaled Tags Per Million
Pig:64.5 nTPM
Mouse:165.2 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.3
2019 Male, age 18, unknown 138.5
1870 Female, age 42, unknown 135.8
2219 Male, age 76, both hemispheres 135.5
1827 Male, age 72, unknown 134.8
2411 Female, age 72, unknown 134.8
2666 Male, age 74, left hemisphere 133.1
1833 Male, age 53, unknown 130.3
2828 Female, age 72, unknown 128.7
1830 Male, age 51, unknown 127.7
2586 Male, age 75, left hemisphere 124.2
Dorsal raphe nucleus
nTPM: 131.3
2298 Female, age 72, unknown 135.7
1828 Male, age 53, unknown 132.7
2047 Male, age 72, unknown 131.9
2750 Male, age 76, both hemispheres 131.8
2016 Female, age 72, unknown 124.6
Inferior colliculus
nTPM: 132.1
2097 Female, age 72, unknown 134.0
2849 Male, age 72, unknown 132.7
1890 Male, age 53, unknown 131.4
1848 Female, age 42, unknown 130.5
Median raphe nucleus
nTPM: 139.3
2220 Male, age 76, midline 139.3
Pedunculopontine tegmental nucleus
nTPM: 136.5
2334 Male, age 80, both hemispheres 138.5
2338 Male, age 61, both hemispheres 137.1
1921 Female, age 85, both hemispheres 133.8
Periaquaductal grey, anterior
nTPM: 131.1
1947 Male, age 18, unknown 132.1
1795 Male, age 51, unknown 130.8
2502 Female, age 75, unknown 130.3
Periaquaductal grey, dorsal
nTPM: 130.1
2850 Male, age 76, both hemispheres 135.9
2464 Female, age 72, unknown 128.8
1831 Male, age 72, unknown 128.0
1840 Male, age 53, unknown 127.7
Periaquaductal grey, lateral
nTPM: 130.6
2272 Male, age 74, both hemispheres 132.8
2140 Male, age 76, both hemispheres 129.9
2053 Male, age 18, unknown 129.2
Pretectal area
nTPM: 138.7
1816 Male, age 51, unknown 153.9
1944 Female, age 72, unknown 146.6
1817 Female, age 42, unknown 146.3
2007 Male, age 72, unknown 144.1
2667 Female, age 75, unknown 142.0
1815 Male, age 53, unknown 140.7
2273 Male, age 74, both hemispheres 134.1
2224 Female, age 72, unknown 133.0
2825 Male, age 18, unknown 130.2
2407 Male, age 75, both hemispheres 128.6
2316 Male, age 76, right hemisphere 126.7
Red nucleus
nTPM: 133.0
1821 Female, age 72, unknown 140.1
2785 Male, age 18, unknown 137.0
1904 Male, age 53, unknown 134.9
1865 Male, age 51, unknown 134.7
2725 Female, age 75, unknown 134.5
2503 Female, age 72, unknown 134.0
1954 Female, age 42, unknown 133.7
2823 Male, age 76, right hemisphere 131.3
2227 Male, age 72, unknown 130.9
2769 Male, age 72, unknown 130.9
2588 Male, age 74, left hemisphere 129.6
2584 Male, age 75, left hemisphere 124.2
Substantia nigra
nTPM: 133.7
2409 Female, age 72, unknown 145.2
1889 Female, age 72, unknown 140.7
1916 Female, age 42, unknown 139.5
1941 Male, age 53, unknown 134.5
1851 Male, age 51, unknown 133.4
2241 Male, age 72, unknown 131.5
2665 Male, age 74, both hemispheres 130.9
2699 Male, age 18, unknown 130.8
2590 Female, age 75, unknown 126.1
2583 Male, age 75, right hemisphere 124.0
Superior colliculus
nTPM: 133.0
2087 Female, age 72, unknown 138.3
2668 Female, age 75, unknown 136.4
1895 Male, age 76, right hemisphere 135.5
1796 Male, age 53, unknown 135.0
1913 Female, age 42, unknown 134.3
2261 Male, age 18, unknown 132.6
2587 Male, age 74, left hemisphere 132.5
1995 Male, age 72, unknown 131.1
1839 Male, age 51, unknown 128.8
2664 Male, age 75, both hemispheres 125.9
Ventral tegmental area
nTPM: 132.7
2410 Female, age 72, unknown 136.7
2223 Female, age 72, unknown 136.3
1915 Female, age 42, unknown 133.2
2218 Male, age 76, both hemispheres 133.2
1942 Male, age 51, unknown 128.8
2021 Male, age 53, unknown 128.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.2
Samples: 139

Max nTPM: 427.6
Min nTPM: 45.2
Std nTPM: 55.6
Median nTPM: 79.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 427.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 383.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 358.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 278.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 217.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 205.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 200.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 187.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 160.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 154.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 148.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 327.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 327.6
FF:10158-103A5 76 years, female 327.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.5
Pig sample Sample description nTPM
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 88.0
Min nTPM: 48.9
Sample A Female 64.4
Sample B Female 48.9
Sample C Male 88.0
Sample D Male 56.7
Periaqueductal gray
nTPM: 46.1
Samples: 3

Max nTPM: 52.6
Min nTPM: 41.6
Sample B Female 44.2
Sample C Male 52.6
Sample D Male 41.6
Substantia nigra
nTPM: 51.8
Samples: 4

Max nTPM: 64.3
Min nTPM: 39.1
Sample A Female 64.3
Sample B Female 39.1
Sample C Male 57.4
Sample D Male 46.4
Superior colliculi
nTPM: 62.5
Samples: 4

Max nTPM: 78.9
Min nTPM: 46.5
Sample A Female 66.4
Sample B Female 46.5
Sample C Male 78.9
Sample D Male 58.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 165.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.2
Samples: 4

Max nTPM: 173.0
Min nTPM: 159.1
Sample A Male 160.9
Sample B Male 159.1
Sample C Female 167.6
Sample D Female 173.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68161466 Antisense, RP_041122_01_D07, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.