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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:233.8 nTPM
GTEx:233.8 nTPM
FANTOM5:615.7 Scaled Tags Per Million
Pig:31.5 nTPM
Mouse:135.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 233.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 233.8
Samples: 105

Max nTPM: 372.7
Min nTPM: 68.5
Std nTPM: 52.3
Median nTPM:
491_1 89 years, female 372.7
413_1 59 years, female 355.5
149_1 88 years, male 343.9
315_1 62 years, female 334.3
501_1 88 years, male 327.9
353_1 82 years, female 320.9
321_1 62 years, female 320.6
43_1 64 years, female 317.3
414_1 84 years, female 315.6
335_1 73 years, female 314.5
217_1 76 years, male 311.5
389_1 86 years, female 311.1
32_1 67 years, male 308.0
163_1 78 years, male 304.2
495_1 57 years, female 298.2
137_1 83 years, male 294.8
349_1 83 years, male 289.7
229_1 69 years, female 284.2
265_1 87 years, male 276.8
490_1 67 years, female 276.8
218_1 71 years, female 276.5
81_1 67 years, male 274.8
354_1 81 years, female 269.2
320_1 89 years, female 266.7
319_1 81 years, male 265.7
415_1 77 years, female 265.4
376_1 75 years, female 264.0
503_1 68 years, male 263.9
314_1 67 years, male 260.4
518_1 75 years, female 259.3
189_1 76 years, male 256.9
394_1 75 years, female 256.3
468_1 89 years, male 254.8
466_1 57 years, female 254.0
162_1 79 years, female 252.7
350_1 84 years, female 252.5
348_1 84 years, male 248.0
452_1 88 years, female 245.7
145_1 84 years, male 244.9
139_1 64 years, female 244.1
499_1 55 years, female 242.8
318_1 68 years, male 242.3
4_1 88 years, female 241.0
117_1 61 years, male 236.0
404_1 82 years, female 235.9
243_1 75 years, male 235.0
126_1 63 years, male 234.7
307_1 66 years, female 234.3
291_1 76 years, male 232.7
264_1 73 years, female 232.4
317_1 60 years, male 231.6
506_1 65 years, male 230.2
406_1 79 years, male 229.7
177_1 74 years, male 228.1
172_1 72 years, female 225.8
237_1 82 years, male 225.6
386_1 76 years, male 225.2
295_1 61 years, female 224.2
384_1 83 years, male 223.7
405_1 91 years, male 222.5
246_1 77 years, male 220.4
142_1 61 years, female 220.2
254_1 77 years, female 219.3
153_1 70 years, female 217.0
288_1 66 years, female 216.8
17_1 71 years, male 213.5
324_1 76 years, male 213.1
311_1 78 years, male 212.9
517_1 88 years, male 211.8
351_1 91 years, male 210.9
313_1 79 years, female 210.2
89_1 63 years, male 209.9
6_1 73 years, female 208.6
18_1 88 years, male 205.5
292_1 71 years, male 202.6
396_1 62 years, male 202.1
109_1 81 years, female 201.7
356_1 87 years, female 199.7
447_1 81 years, male 199.7
35_1 74 years, female 199.2
308_1 70 years, female 198.7
173_1 67 years, male 196.4
379_1 60 years, male 195.2
42_1 85 years, male 194.6
322_1 76 years, male 192.5
251_1 78 years, male 191.9
352_1 62 years, male 191.3
425_1 59 years, female 190.8
293_1 68 years, female 189.4
375_1 74 years, female 187.2
115_1 83 years, male 186.5
377_1 82 years, female 180.2
347_1 72 years, male 179.3
2_1 77 years, female 177.2
526_1 61 years, male 175.3
355_1 70 years, female 171.7
119_1 70 years, female 166.7
266_1 85 years, male 164.8
480_1 63 years, male 163.9
9_1 66 years, female 152.9
316_1 62 years, male 152.2
120_1 70 years, female 142.4
286_1 68 years, female 140.1
41_1 94 years, female 119.1
99_1 64 years, male 68.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 615.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 615.7
FF:10030-101E3 24-65 years, mixed 615.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.5
Pig sample Sample description nTPM
Retina
nTPM: 31.6
Samples: 4

Max nTPM: 36.5
Min nTPM: 28.7
Sample A Female 30.1
Sample B Female 28.7
Sample C Male 30.9
Sample D Male 36.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 135.2
Mouse sample Sample description nTPM
Retina
nTPM: 135.2
Samples: 4

Max nTPM: 145.6
Min nTPM: 115.6
Sample A Male 137.5
Sample B Male 145.6
Sample C Female 115.6
Sample D Female 141.9

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by the Knut & Alice Wallenberg Foundation.