BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:60.2 nTPM
HPA:60.2 nTPM
GTEx:34.9 nTPM
FANTOM5:152.5 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:30.1 nTPM
Allen mouse:14.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000657
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.2
2289 Male, age 61, right hemisphere 58.3
2288 Male, age 75, left hemisphere 57.6
2481 Female, age 94, left hemisphere 57.1
2846 Female, age 79, unknown 56.6
1854 Male, age 80, left hemisphere 55.8
1857 Female, age 85, left hemisphere 55.1
2290 Female, age 72, unknown 54.8
1781 Male, age 74, unknown 54.6
Claustrum
nTPM: 58.1
2292 Female, age 85, both hemispheres 61.7
2196 Female, age 79, unknown 59.4
1956 Male, age 74, unknown 58.9
2645 Female, age 72, unknown 58.6
2568 Male, age 61, both hemispheres 58.2
2284 Female, age 91, both hemispheres 57.8
2491 Male, age 75, both hemispheres 57.0
2198 Male, age 80, both hemispheres 56.8
2392 Female, age 94, both hemispheres 54.4
Globus pallidus, externus
nTPM: 60.1
2567 Female, age 72, unknown 65.6
2646 Male, age 61, right hemisphere 62.7
1996 Male, age 80, right hemisphere 57.9
2772 Female, age 79, unknown 57.1
2395 Male, age 75, both hemispheres 57.0
Globus pallidus, internus
nTPM: 60.2
2566 Female, age 72, unknown 63.5
2111 Female, age 85, right hemisphere 62.4
2778 Female, age 91, both hemispheres 61.4
1818 Male, age 74, unknown 60.5
2037 Male, age 80, right hemisphere 59.3
2287 Male, age 75, right hemisphere 57.6
2483 Female, age 94, right hemisphere 56.7
Nucleus accumbens
nTPM: 56.0
2698 Female, age 72, unknown 57.9
2391 Female, age 94, left hemisphere 57.8
2732 Male, age 80, right hemisphere 56.5
1806 Female, age 85, left hemisphere 56.2
1783 Male, age 74, unknown 55.7
2286 Male, age 75, left hemisphere 55.7
2824 Male, age 61, right hemisphere 54.0
1856 Female, age 91, right hemisphere 53.8
Nucleus basalis of Meynert
nTPM: 58.6
2569 Male, age 61, both hemispheres 62.0
2821 Male, age 75, both hemispheres 59.8
2484 Female, age 94, left hemisphere 56.7
2393 Male, age 80, right hemisphere 55.7
Nucleus of the diagonal band
nTPM: 55.5
1979 Male, age 74, unknown 58.6
2195 Female, age 85, both hemispheres 56.6
2775 Male, age 80, right hemisphere 54.5
1812 Female, age 91, both hemispheres 54.1
2029 Male, age 61, right hemisphere 53.8
Olfactory tubercle
nTPM: 55.4
2856 Male, age 75, right hemisphere 56.9
1846 Male, age 80, right hemisphere 55.7
2487 Female, age 94, left hemisphere 55.1
1998 Female, age 91, both hemispheres 54.1
Putamen
nTPM: 57.8
2647 Male, age 75, left hemisphere 62.4
2489 Female, age 72, unknown 60.9
2482 Female, age 94, left hemisphere 58.4
1829 Male, age 74, unknown 58.2
2466 Female, age 79, unknown 55.6
1838 Male, age 80, right hemisphere 55.0
1937 Female, age 91, right hemisphere 54.3
Septal nuclei
nTPM: 55.2
2199 Male, age 80, right hemisphere 58.1
2629 Female, age 94, right hemisphere 57.0
2059 Female, age 85, both hemispheres 56.0
1960 Male, age 74, unknown 54.7
2394 Male, age 61, left hemisphere 54.7
2009 Female, age 91, both hemispheres 53.6
2031 Female, age 72, unknown 52.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.0
Samples: 246

Max nTPM: 53.1
Min nTPM: 11.4
Std nTPM: 7.0
Median nTPM: 32.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 53.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 51.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 50.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 49.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 46.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 46.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 46.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 46.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 46.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 46.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 46.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.4
Samples: 246

Max nTPM: 74.3
Min nTPM: 14.0
Std nTPM: 8.9
Median nTPM: 32.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 74.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 67.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 60.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 57.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 57.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 52.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 52.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 52.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 50.1
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 49.9
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 49.7
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Brain - Putamen (basal ganglia)
Average nTPM: 34.9
Samples: 205

Max nTPM: 52.9
Min nTPM: 16.9
Std nTPM: 6.9
Median nTPM: 34.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 52.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 50.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 49.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 48.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 48.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 48.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 47.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 47.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 47.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 47.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 46.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 151.7
FF:10164-103B2 76 years, female 151.7
Globus pallidus
Scaled Tags Per Million: 152.5
FF:10161-103A8 76 years, female 171.6
FF:10175-103C4 60 years, female 133.4
Nucleus accumbens
Scaled Tags Per Million: 129.8
FF:10037-101F1 23-56 years, mixed 129.8
Putamen
Scaled Tags Per Million: 102.3
FF:10176-103C5 60 years, female 102.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.6
Pig sample Sample description nTPM
Caudate
nTPM: 39.1
Samples: 4

Max nTPM: 42.4
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 39.3
Sample C Male 42.4
Sample D Male 38.0
Putamen
nTPM: 39.7
Samples: 4

Max nTPM: 43.4
Min nTPM: 36.3
Sample A Female 42.6
Sample B Female 36.3
Sample C Male 36.6
Sample D Male 43.4
Septum
nTPM: 42.6
Samples: 4

Max nTPM: 46.8
Min nTPM: 40.5
Sample A Female 41.3
Sample B Female 40.5
Sample C Male 41.8
Sample D Male 46.8
Ventral pallidum
nTPM: 40.8
Samples: 4

Max nTPM: 43.9
Min nTPM: 36.4
Sample A Female 36.4
Sample B Female 39.0
Sample C Male 43.9
Sample D Male 43.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 30.1
Samples: 4

Max nTPM: 32.8
Min nTPM: 27.3
Sample A Male 28.5
Sample B Male 31.9
Sample C Female 32.8
Sample D Female 27.3
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 31.5
Min nTPM: 21.1
Sample A Male 30.4
Sample B Male 21.1
Sample C Female 24.6
Sample D Female 31.5
Ventral forebrain
nTPM: 29.6
Samples: 4

Max nTPM: 32.7
Min nTPM: 27.0
Sample A Male 32.7
Sample B Male 30.5
Sample C Female 27.0
Sample D Female 28.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.1
100146043 Antisense, RP_110623_03_F07, Mouse strain C57BL/6J (56 days, male) 14.9
100147503 Antisense, RP_110623_04_H07, Mouse strain C57BL/6J (56 days, male) 13.2
Pallidum
Expression energy: 12.6
100146043 Antisense, RP_110623_03_F07, Mouse strain C57BL/6J (56 days, male) 13.4
100147503 Antisense, RP_110623_04_H07, Mouse strain C57BL/6J (56 days, male) 11.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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