MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:60.6 nTPM
HPA:60.6 nTPM
GTEx:34.1 nTPM
FANTOM5:154.3 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:33.6 nTPM
Allen mouse:12.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.3
2219 Male, age 76, both hemispheres 60.9
2586 Male, age 75, left hemisphere 59.8
2666 Male, age 74, left hemisphere 59.5
1870 Female, age 42, unknown 58.8
1830 Male, age 51, unknown 58.7
1833 Male, age 53, unknown 58.7
1827 Male, age 72, unknown 57.6
2828 Female, age 72, unknown 57.5
2411 Female, age 72, unknown 55.6
2019 Male, age 18, unknown 55.4
Dorsal raphe nucleus
nTPM: 55.3
1828 Male, age 53, unknown 56.1
2750 Male, age 76, both hemispheres 55.9
2047 Male, age 72, unknown 55.4
2016 Female, age 72, unknown 54.9
2298 Female, age 72, unknown 54.5
Inferior colliculus
nTPM: 57.4
2849 Male, age 72, unknown 61.0
1848 Female, age 42, unknown 57.3
1890 Male, age 53, unknown 56.4
2097 Female, age 72, unknown 54.8
Median raphe nucleus
nTPM: 59.0
2220 Male, age 76, midline 59.0
Pedunculopontine tegmental nucleus
nTPM: 60.6
2338 Male, age 61, both hemispheres 65.5
2334 Male, age 80, both hemispheres 59.0
1921 Female, age 85, both hemispheres 57.5
Periaquaductal grey, anterior
nTPM: 55.8
1947 Male, age 18, unknown 56.9
1795 Male, age 51, unknown 56.5
2502 Female, age 75, unknown 54.0
Periaquaductal grey, dorsal
nTPM: 56.5
1831 Male, age 72, unknown 57.8
2850 Male, age 76, both hemispheres 56.9
2464 Female, age 72, unknown 55.7
1840 Male, age 53, unknown 55.5
Periaquaductal grey, lateral
nTPM: 57.1
2140 Male, age 76, both hemispheres 58.1
2053 Male, age 18, unknown 57.2
2272 Male, age 74, both hemispheres 56.1
Pretectal area
nTPM: 57.6
2407 Male, age 75, both hemispheres 60.4
1817 Female, age 42, unknown 58.9
2825 Male, age 18, unknown 58.6
1815 Male, age 53, unknown 57.8
2667 Female, age 75, unknown 57.8
1816 Male, age 51, unknown 57.5
2316 Male, age 76, right hemisphere 57.4
1944 Female, age 72, unknown 57.1
2007 Male, age 72, unknown 56.4
2273 Male, age 74, both hemispheres 55.9
2224 Female, age 72, unknown 55.6
Red nucleus
nTPM: 59.3
2503 Female, age 72, unknown 60.9
2588 Male, age 74, left hemisphere 60.3
2725 Female, age 75, unknown 60.1
2769 Male, age 72, unknown 60.0
2227 Male, age 72, unknown 59.8
1954 Female, age 42, unknown 59.5
1865 Male, age 51, unknown 59.3
1904 Male, age 53, unknown 59.2
1821 Female, age 72, unknown 58.8
2823 Male, age 76, right hemisphere 58.5
2584 Male, age 75, left hemisphere 58.3
2785 Male, age 18, unknown 57.5
Substantia nigra
nTPM: 56.7
2590 Female, age 75, unknown 59.2
2699 Male, age 18, unknown 59.2
2583 Male, age 75, right hemisphere 58.1
2665 Male, age 74, both hemispheres 57.6
1941 Male, age 53, unknown 57.0
1889 Female, age 72, unknown 56.9
1916 Female, age 42, unknown 55.7
1851 Male, age 51, unknown 55.2
2409 Female, age 72, unknown 55.1
2241 Male, age 72, unknown 53.1
Superior colliculus
nTPM: 57.7
1913 Female, age 42, unknown 59.7
1839 Male, age 51, unknown 59.1
2664 Male, age 75, both hemispheres 59.1
1995 Male, age 72, unknown 57.5
2261 Male, age 18, unknown 57.4
1796 Male, age 53, unknown 57.2
2587 Male, age 74, left hemisphere 57.0
2087 Female, age 72, unknown 56.9
1895 Male, age 76, right hemisphere 56.5
2668 Female, age 75, unknown 56.3
Ventral tegmental area
nTPM: 56.4
2223 Female, age 72, unknown 58.9
2021 Male, age 53, unknown 56.9
2218 Male, age 76, both hemispheres 56.9
1915 Female, age 42, unknown 56.0
1942 Male, age 51, unknown 55.4
2410 Female, age 72, unknown 54.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.1
Samples: 139

Max nTPM: 65.2
Min nTPM: 18.7
Std nTPM: 8.4
Median nTPM: 32.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 61.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 58.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 57.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 55.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 54.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 53.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 48.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 48.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 47.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 46.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 154.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 154.3
FF:10158-103A5 76 years, female 154.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.6
Pig sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 49.0
Min nTPM: 39.4
Sample A Female 49.0
Sample B Female 39.4
Sample C Male 45.9
Sample D Male 44.1
Periaqueductal gray
nTPM: 41.9
Samples: 3

Max nTPM: 45.1
Min nTPM: 39.2
Sample B Female 39.2
Sample C Male 45.1
Sample D Male 41.5
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 50.3
Min nTPM: 38.1
Sample A Female 38.1
Sample B Female 42.0
Sample C Male 45.2
Sample D Male 50.3
Superior colliculi
nTPM: 44.1
Samples: 4

Max nTPM: 48.0
Min nTPM: 40.3
Sample A Female 40.3
Sample B Female 42.8
Sample C Male 45.1
Sample D Male 48.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.6
Samples: 4

Max nTPM: 37.5
Min nTPM: 30.5
Sample A Male 32.5
Sample B Male 33.9
Sample C Female 37.5
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
100146043 Antisense, RP_110623_03_F07, Mouse strain C57BL/6J (56 days, male) 14.3
100147503 Antisense, RP_110623_04_H07, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.