MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.3 nTPM
HPA:58.3 nTPM
GTEx:57.1 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:55.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.6
2019 Male, age 18, unknown 56.6
1827 Male, age 72, unknown 55.8
2828 Female, age 72, unknown 55.6
2411 Female, age 72, unknown 55.2
2219 Male, age 76, both hemispheres 55.1
1870 Female, age 42, unknown 54.8
1833 Male, age 53, unknown 54.4
2666 Male, age 74, left hemisphere 53.9
1830 Male, age 51, unknown 53.5
2586 Male, age 75, left hemisphere 50.9
Dorsal raphe nucleus
nTPM: 55.0
2298 Female, age 72, unknown 57.3
1828 Male, age 53, unknown 55.9
2750 Male, age 76, both hemispheres 54.7
2047 Male, age 72, unknown 54.3
2016 Female, age 72, unknown 52.8
Inferior colliculus
nTPM: 53.7
2097 Female, age 72, unknown 55.6
1848 Female, age 42, unknown 53.6
1890 Male, age 53, unknown 53.5
2849 Male, age 72, unknown 52.0
Median raphe nucleus
nTPM: 56.8
2220 Male, age 76, midline 56.8
Pedunculopontine tegmental nucleus
nTPM: 56.6
2338 Male, age 61, both hemispheres 57.9
2334 Male, age 80, both hemispheres 57.7
1921 Female, age 85, both hemispheres 54.2
Periaquaductal grey, anterior
nTPM: 54.0
2502 Female, age 75, unknown 54.5
1947 Male, age 18, unknown 53.9
1795 Male, age 51, unknown 53.6
Periaquaductal grey, dorsal
nTPM: 53.9
2850 Male, age 76, both hemispheres 55.9
1831 Male, age 72, unknown 55.7
1840 Male, age 53, unknown 52.8
2464 Female, age 72, unknown 51.4
Periaquaductal grey, lateral
nTPM: 53.9
2272 Male, age 74, both hemispheres 55.3
2053 Male, age 18, unknown 53.6
2140 Male, age 76, both hemispheres 52.6
Pretectal area
nTPM: 57.3
2273 Male, age 74, both hemispheres 60.3
1817 Female, age 42, unknown 60.2
1816 Male, age 51, unknown 59.9
2667 Female, age 75, unknown 58.7
1815 Male, age 53, unknown 58.3
1944 Female, age 72, unknown 58.3
2007 Male, age 72, unknown 57.7
2224 Female, age 72, unknown 55.6
2407 Male, age 75, both hemispheres 55.2
2316 Male, age 76, right hemisphere 53.4
2825 Male, age 18, unknown 52.2
Red nucleus
nTPM: 55.8
1821 Female, age 72, unknown 59.0
2725 Female, age 75, unknown 58.9
2785 Male, age 18, unknown 57.3
1904 Male, age 53, unknown 56.6
2503 Female, age 72, unknown 56.5
1865 Male, age 51, unknown 56.2
1954 Female, age 42, unknown 56.2
2823 Male, age 76, right hemisphere 55.3
2588 Male, age 74, left hemisphere 55.0
2769 Male, age 72, unknown 53.4
2227 Male, age 72, unknown 53.3
2584 Male, age 75, left hemisphere 51.4
Substantia nigra
nTPM: 58.3
1916 Female, age 42, unknown 63.4
1851 Male, age 51, unknown 61.1
2241 Male, age 72, unknown 60.1
1889 Female, age 72, unknown 59.8
2699 Male, age 18, unknown 59.1
1941 Male, age 53, unknown 58.5
2409 Female, age 72, unknown 57.8
2665 Male, age 74, both hemispheres 55.0
2583 Male, age 75, right hemisphere 54.1
2590 Female, age 75, unknown 53.8
Superior colliculus
nTPM: 54.2
1913 Female, age 42, unknown 56.4
1995 Male, age 72, unknown 55.9
2261 Male, age 18, unknown 55.1
1796 Male, age 53, unknown 54.8
2087 Female, age 72, unknown 54.8
2587 Male, age 74, left hemisphere 54.8
1895 Male, age 76, right hemisphere 54.4
2668 Female, age 75, unknown 53.5
1839 Male, age 51, unknown 53.0
2664 Male, age 75, both hemispheres 49.7
Ventral tegmental area
nTPM: 56.8
1915 Female, age 42, unknown 59.9
2410 Female, age 72, unknown 59.8
2218 Male, age 76, both hemispheres 58.0
2223 Female, age 72, unknown 55.2
2021 Male, age 53, unknown 54.1
1942 Male, age 51, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.1
Samples: 139

Max nTPM: 85.5
Min nTPM: 37.1
Std nTPM: 9.5
Median nTPM: 57.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 85.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 79.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 75.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 75.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 74.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 73.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 73.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 72.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 71.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 71.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.6
FF:10158-103A5 76 years, female 100.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.6
Pig sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 51.0
Min nTPM: 32.0
Sample A Female 51.0
Sample B Female 32.0
Sample C Male 44.0
Sample D Male 36.7
Periaqueductal gray
nTPM: 31.2
Samples: 3

Max nTPM: 34.6
Min nTPM: 29.3
Sample B Female 29.7
Sample C Male 34.6
Sample D Male 29.3
Substantia nigra
nTPM: 37.9
Samples: 4

Max nTPM: 48.2
Min nTPM: 30.7
Sample A Female 48.2
Sample B Female 32.4
Sample C Male 40.4
Sample D Male 30.7
Superior colliculi
nTPM: 42.6
Samples: 4

Max nTPM: 50.0
Min nTPM: 35.4
Sample A Female 47.5
Sample B Female 35.4
Sample C Male 50.0
Sample D Male 37.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 57.3
Min nTPM: 51.4
Sample A Male 55.6
Sample B Male 57.3
Sample C Female 51.4
Sample D Female 56.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69526749 Antisense, RP_050421_01_E09, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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