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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:45.6 nTPM
HPA:45.6 nTPM
GTEx:60.5 nTPM
FANTOM5:88.0 Scaled Tags Per Million
Pig:92.1 nTPM
Mouse:425.6 nTPM
Allen mouse:5.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Amygdala
nTPM: 42.7
2814 Male, age 76, right hemisphere 56.6
2514 Male, age 75, right hemisphere 43.0
1987 Female, age 91, left hemisphere 39.2
2517 Female, age 94, left hemisphere 38.7
2695 Female, age 67, right hemisphere 36.2
Basal amygdala
nTPM: 45.5
2243 Female, age 91, right hemisphere 54.5
2110 Male, age 80, left hemisphere 51.1
1955 Male, age 76, both hemispheres 46.6
2685 Female, age 94, left hemisphere 46.3
2609 Male, age 75, right hemisphere 41.4
2827 Female, age 67, right hemisphere 33.4
Central amygdala
nTPM: 40.0
1905 Male, age 76, both hemispheres 51.1
2239 Male, age 80, left hemisphere 41.5
2701 Female, age 91, right hemisphere 37.7
2826 Female, age 94, left hemisphere 35.6
2515 Male, age 75, right hemisphere 34.2
Corticomedial amygdala
nTPM: 45.6
2829 Male, age 80, left hemisphere 56.4
2240 Male, age 76, both hemispheres 50.5
2242 Female, age 91, right hemisphere 48.6
2429 Female, age 94, left hemisphere 44.0
2428 Male, age 75, right hemisphere 40.8
2535 Female, age 67, right hemisphere 33.2
Lateral amygdala
nTPM: 38.6
1883 Male, age 76, both hemispheres 47.8
2534 Female, age 94, left hemisphere 43.0
2516 Male, age 75, right hemisphere 42.2
2255 Female, age 91, right hemisphere 35.4
2256 Male, age 80, left hemisphere 33.5
2830 Female, age 67, right hemisphere 29.5
Stria terminalis, bed nucleus
nTPM: 44.0
1974 Female, age 91, both hemispheres 50.6
2486 Female, age 94, both hemispheres 44.8
2201 Male, age 74, unknown 36.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 60.5
Samples: 152

Max nTPM: 122.9
Min nTPM: 6.4
Std nTPM: 21.0
Median nTPM: 56.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 122.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 118.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 117.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 113.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 109.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 108.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 102.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 100.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 95.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 94.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 91.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 89.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 88.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 87.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 86.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 85.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 85.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 83.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 81.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 80.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 79.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 78.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 78.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 77.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 77.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 76.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 76.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 75.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 74.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 74.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 74.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 73.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 73.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 71.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 71.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 70.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 70.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 69.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 69.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 69.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 68.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 68.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 67.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 67.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 67.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 66.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 66.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 65.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 64.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 64.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 64.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 63.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 63.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 63.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 62.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 62.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 61.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 61.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 60.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 60.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 60.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 59.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 59.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 58.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 58.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 57.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 57.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 57.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 56.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 56.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 56.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 55.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 55.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 55.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 55.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 54.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 54.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 54.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 54.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 53.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 53.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 53.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 53.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 53.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 52.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 51.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 51.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 51.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 50.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 49.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 49.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 49.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 49.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 49.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 48.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 48.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 48.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 47.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 47.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 47.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 47.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 47.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 47.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 47.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 46.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 46.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 45.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 45.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 45.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 45.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 44.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 43.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 43.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 43.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 43.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 42.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 41.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 41.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 39.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 38.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 38.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 37.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 36.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 36.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 35.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 35.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 34.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 33.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 33.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 32.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 31.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 31.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 30.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 28.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 13.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 88.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 88.0
FF:10151-102I7 76 years, female 88.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 92.1
Pig sample Sample description nTPM
Amygdala
nTPM: 92.1
Samples: 4

Max nTPM: 125.6
Min nTPM: 72.8
Sample A Female 125.6
Sample B Female 72.8
Sample C Male 73.4
Sample D Male 96.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 425.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 425.6
Samples: 4

Max nTPM: 445.6
Min nTPM: 407.0
Sample A Male 431.2
Sample B Male 407.0
Sample C Female 445.6
Sample D Female 418.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.8
691 Antisense, RP_040315_01_16, Mouse strain C57BL/6J (56 days, male) 11.5
690 Antisense, RP_040315_01_16, Mouse strain C57BL/6J (56 days, male) 11.0
71919206 Antisense, RP_051012_02_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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