MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.6 nTPM
HPA:42.6 nTPM
GTEx:48.2 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:151.9 nTPM
Mouse:302.6 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2019 Male, age 18, unknown 43.0
1827 Male, age 72, unknown 42.6
2411 Female, age 72, unknown 40.2
2666 Male, age 74, left hemisphere 40.0
2219 Male, age 76, both hemispheres 39.7
1870 Female, age 42, unknown 36.9
2586 Male, age 75, left hemisphere 35.3
2828 Female, age 72, unknown 35.3
1833 Male, age 53, unknown 35.1
1830 Male, age 51, unknown 33.6
Dorsal raphe nucleus
nTPM: 35.0
2298 Female, age 72, unknown 39.5
1828 Male, age 53, unknown 36.3
2047 Male, age 72, unknown 35.7
2750 Male, age 76, both hemispheres 35.4
2016 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 40.2
2097 Female, age 72, unknown 46.0
1848 Female, age 42, unknown 40.0
2849 Male, age 72, unknown 37.8
1890 Male, age 53, unknown 36.9
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Pedunculopontine tegmental nucleus
nTPM: 39.2
1921 Female, age 85, both hemispheres 42.5
2334 Male, age 80, both hemispheres 39.1
2338 Male, age 61, both hemispheres 35.9
Periaquaductal grey, anterior
nTPM: 37.9
1947 Male, age 18, unknown 40.6
1795 Male, age 51, unknown 37.6
2502 Female, age 75, unknown 35.5
Periaquaductal grey, dorsal
nTPM: 32.9
2464 Female, age 72, unknown 35.5
1840 Male, age 53, unknown 34.2
1831 Male, age 72, unknown 33.6
2850 Male, age 76, both hemispheres 28.1
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 33.7
2053 Male, age 18, unknown 33.2
2140 Male, age 76, both hemispheres 26.9
Pretectal area
nTPM: 42.6
1816 Male, age 51, unknown 61.4
1944 Female, age 72, unknown 52.4
1817 Female, age 42, unknown 50.0
2007 Male, age 72, unknown 49.3
2667 Female, age 75, unknown 42.2
1815 Male, age 53, unknown 40.9
2407 Male, age 75, both hemispheres 39.0
2224 Female, age 72, unknown 35.6
2825 Male, age 18, unknown 33.5
2273 Male, age 74, both hemispheres 33.0
2316 Male, age 76, right hemisphere 30.8
Red nucleus
nTPM: 34.5
2725 Female, age 75, unknown 39.2
1821 Female, age 72, unknown 38.9
2785 Male, age 18, unknown 38.9
2584 Male, age 75, left hemisphere 37.4
2588 Male, age 74, left hemisphere 35.6
1954 Female, age 42, unknown 33.6
2503 Female, age 72, unknown 33.0
2769 Male, age 72, unknown 33.0
2227 Male, age 72, unknown 32.7
2823 Male, age 76, right hemisphere 31.8
1865 Male, age 51, unknown 31.1
1904 Male, age 53, unknown 28.7
Substantia nigra
nTPM: 37.9
1941 Male, age 53, unknown 55.8
1889 Female, age 72, unknown 47.6
2241 Male, age 72, unknown 37.6
2665 Male, age 74, both hemispheres 36.7
1851 Male, age 51, unknown 35.6
2590 Female, age 75, unknown 35.5
2583 Male, age 75, right hemisphere 35.3
1916 Female, age 42, unknown 34.7
2409 Female, age 72, unknown 33.5
2699 Male, age 18, unknown 26.5
Superior colliculus
nTPM: 38.7
2261 Male, age 18, unknown 46.0
2087 Female, age 72, unknown 45.5
1895 Male, age 76, right hemisphere 42.8
2587 Male, age 74, left hemisphere 39.3
1796 Male, age 53, unknown 38.6
1839 Male, age 51, unknown 36.9
2668 Female, age 75, unknown 36.7
1913 Female, age 42, unknown 36.6
2664 Male, age 75, both hemispheres 33.9
1995 Male, age 72, unknown 31.3
Ventral tegmental area
nTPM: 34.1
2410 Female, age 72, unknown 39.5
2218 Male, age 76, both hemispheres 35.9
1915 Female, age 42, unknown 34.5
2223 Female, age 72, unknown 32.7
1942 Male, age 51, unknown 32.0
2021 Male, age 53, unknown 29.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 245.9
Min nTPM: 22.8
Std nTPM: 26.5
Median nTPM: 41.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 245.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 182.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 143.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 99.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 93.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 92.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 87.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 78.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 74.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 74.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.6
FF:10158-103A5 76 years, female 42.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 151.9
Pig sample Sample description nTPM
Midbrain
nTPM: 130.6
Samples: 4

Max nTPM: 193.9
Min nTPM: 81.5
Sample A Female 81.5
Sample B Female 106.2
Sample C Male 193.9
Sample D Male 140.6
Periaqueductal gray
nTPM: 97.0
Samples: 3

Max nTPM: 116.4
Min nTPM: 87.1
Sample B Female 87.6
Sample C Male 116.4
Sample D Male 87.1
Substantia nigra
nTPM: 110.1
Samples: 4

Max nTPM: 149.6
Min nTPM: 69.8
Sample A Female 149.6
Sample B Female 81.5
Sample C Male 139.3
Sample D Male 69.8
Superior colliculi
nTPM: 152.0
Samples: 4

Max nTPM: 229.4
Min nTPM: 91.7
Sample A Female 150.9
Sample B Female 91.7
Sample C Male 229.4
Sample D Male 135.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 302.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 302.6
Samples: 4

Max nTPM: 313.1
Min nTPM: 293.2
Sample A Male 293.2
Sample B Male 305.8
Sample C Female 313.1
Sample D Female 298.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
691 Antisense, RP_040315_01_16, Mouse strain C57BL/6J (56 days, male) 8.1
690 Antisense, RP_040315_01_16, Mouse strain C57BL/6J (56 days, male) 7.0
71919206 Antisense, RP_051012_02_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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