MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA:33.7 nTPM
GTEx:39.1 nTPM
FANTOM5:49.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2586 Male, age 75, left hemisphere 36.0
2019 Male, age 18, unknown 35.9
1827 Male, age 72, unknown 33.8
1870 Female, age 42, unknown 33.4
2411 Female, age 72, unknown 32.1
1833 Male, age 53, unknown 31.0
1830 Male, age 51, unknown 30.3
2666 Male, age 74, left hemisphere 30.2
2828 Female, age 72, unknown 29.7
2219 Male, age 76, both hemispheres 28.8
Dorsal raphe nucleus
nTPM: 33.2
2298 Female, age 72, unknown 36.0
2047 Male, age 72, unknown 33.5
2750 Male, age 76, both hemispheres 32.6
1828 Male, age 53, unknown 32.3
2016 Female, age 72, unknown 31.3
Inferior colliculus
nTPM: 32.6
2097 Female, age 72, unknown 33.6
1890 Male, age 53, unknown 33.4
1848 Female, age 42, unknown 33.3
2849 Male, age 72, unknown 30.0
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Pedunculopontine tegmental nucleus
nTPM: 33.6
1921 Female, age 85, both hemispheres 34.1
2338 Male, age 61, both hemispheres 33.4
2334 Male, age 80, both hemispheres 33.3
Periaquaductal grey, anterior
nTPM: 32.4
1947 Male, age 18, unknown 35.3
1795 Male, age 51, unknown 31.1
2502 Female, age 75, unknown 31.0
Periaquaductal grey, dorsal
nTPM: 31.2
1840 Male, age 53, unknown 32.0
2850 Male, age 76, both hemispheres 31.4
1831 Male, age 72, unknown 30.9
2464 Female, age 72, unknown 30.7
Periaquaductal grey, lateral
nTPM: 31.7
2140 Male, age 76, both hemispheres 31.8
2272 Male, age 74, both hemispheres 31.7
2053 Male, age 18, unknown 31.5
Pretectal area
nTPM: 33.7
1816 Male, age 51, unknown 37.9
2007 Male, age 72, unknown 37.9
1944 Female, age 72, unknown 36.8
1817 Female, age 42, unknown 36.3
2667 Female, age 75, unknown 34.4
2224 Female, age 72, unknown 32.4
1815 Male, age 53, unknown 32.1
2316 Male, age 76, right hemisphere 31.7
2273 Male, age 74, both hemispheres 31.5
2407 Male, age 75, both hemispheres 29.9
2825 Male, age 18, unknown 29.6
Red nucleus
nTPM: 32.2
1821 Female, age 72, unknown 35.8
2503 Female, age 72, unknown 33.1
2785 Male, age 18, unknown 32.8
1865 Male, age 51, unknown 32.7
2725 Female, age 75, unknown 32.6
2823 Male, age 76, right hemisphere 32.3
1904 Male, age 53, unknown 32.2
1954 Female, age 42, unknown 32.1
2769 Male, age 72, unknown 31.6
2227 Male, age 72, unknown 31.4
2584 Male, age 75, left hemisphere 31.1
2588 Male, age 74, left hemisphere 28.4
Substantia nigra
nTPM: 33.0
1889 Female, age 72, unknown 35.9
1916 Female, age 42, unknown 35.9
1941 Male, age 53, unknown 34.7
1851 Male, age 51, unknown 33.7
2583 Male, age 75, right hemisphere 33.6
2241 Male, age 72, unknown 32.6
2409 Female, age 72, unknown 31.5
2590 Female, age 75, unknown 31.1
2665 Male, age 74, both hemispheres 31.1
2699 Male, age 18, unknown 30.2
Superior colliculus
nTPM: 32.0
1895 Male, age 76, right hemisphere 33.9
2668 Female, age 75, unknown 33.9
1796 Male, age 53, unknown 33.0
2087 Female, age 72, unknown 32.8
2261 Male, age 18, unknown 31.9
1913 Female, age 42, unknown 31.7
2587 Male, age 74, left hemisphere 30.9
1839 Male, age 51, unknown 30.8
1995 Male, age 72, unknown 30.7
2664 Male, age 75, both hemispheres 30.2
Ventral tegmental area
nTPM: 31.8
2410 Female, age 72, unknown 33.3
1915 Female, age 42, unknown 32.7
2218 Male, age 76, both hemispheres 32.5
1942 Male, age 51, unknown 30.9
2223 Female, age 72, unknown 30.8
2021 Male, age 53, unknown 30.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 77.6
Min nTPM: 16.3
Std nTPM: 10.3
Median nTPM: 37.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 77.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 69.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 59.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 59.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 58.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 57.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 57.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 56.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 56.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 55.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.2
FF:10158-103A5 76 years, female 49.2

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The Human Protein Atlas

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