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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:127.6 nTPM
HPA:127.6 nTPM
GTEx:127.9 nTPM
FANTOM5:90.7 Scaled Tags Per Million
Pig:81.2 nTPM
Mouse:190.7 nTPM
Allen mouse:2.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 127.6
Sample id Sample description nTPM
Amygdala
nTPM: 127.6
2695 Female, age 67, right hemisphere 130.1
2814 Male, age 76, right hemisphere 130.1
2514 Male, age 75, right hemisphere 127.6
1987 Female, age 91, left hemisphere 126.8
2517 Female, age 94, left hemisphere 123.6
Basal amygdala
nTPM: 123.1
2110 Male, age 80, left hemisphere 128.6
2609 Male, age 75, right hemisphere 124.0
2685 Female, age 94, left hemisphere 122.7
1955 Male, age 76, both hemispheres 121.4
2243 Female, age 91, right hemisphere 121.2
2827 Female, age 67, right hemisphere 120.8
Central amygdala
nTPM: 126.0
1905 Male, age 76, both hemispheres 133.0
2826 Female, age 94, left hemisphere 127.8
2239 Male, age 80, left hemisphere 126.0
2515 Male, age 75, right hemisphere 124.2
2701 Female, age 91, right hemisphere 119.2
Corticomedial amygdala
nTPM: 122.7
2829 Male, age 80, left hemisphere 128.1
2429 Female, age 94, left hemisphere 126.6
2428 Male, age 75, right hemisphere 125.9
2242 Female, age 91, right hemisphere 124.0
2535 Female, age 67, right hemisphere 116.1
2240 Male, age 76, both hemispheres 115.7
Lateral amygdala
nTPM: 125.3
2516 Male, age 75, right hemisphere 130.7
1883 Male, age 76, both hemispheres 129.7
2534 Female, age 94, left hemisphere 126.8
2830 Female, age 67, right hemisphere 125.1
2255 Female, age 91, right hemisphere 120.4
2256 Male, age 80, left hemisphere 119.2
Stria terminalis, bed nucleus
nTPM: 124.9
1974 Female, age 91, both hemispheres 130.5
2486 Female, age 94, both hemispheres 125.9
2201 Male, age 74, unknown 118.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 127.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.9
Samples: 152

Max nTPM: 285.5
Min nTPM: 78.7
Std nTPM: 34.4
Median nTPM: 117.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 285.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 283.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 242.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 224.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 215.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 213.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 203.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 189.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 185.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 184.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 184.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 178.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 178.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 173.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 169.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 168.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 166.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 163.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 161.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 158.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 157.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 156.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 153.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 152.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 151.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 150.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 150.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 149.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 148.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 146.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 146.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 143.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 141.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 140.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 140.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 140.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 139.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 139.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 139.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 137.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 137.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 137.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 135.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 135.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 135.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 134.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 134.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 133.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 133.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 132.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 131.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 131.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 131.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 130.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 127.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 127.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 127.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 126.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 125.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 125.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 124.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 124.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 123.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 122.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 121.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 121.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 119.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 119.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 119.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 117.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 117.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 116.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 115.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 115.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 115.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 115.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 115.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 114.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 114.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 114.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 113.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 113.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 113.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 113.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 112.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 112.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 111.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 110.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 110.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 110.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 110.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 110.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 110.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 110.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 109.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 109.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 109.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 108.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 107.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 107.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 106.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 106.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 106.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 106.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 105.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 105.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 104.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 104.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 104.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 104.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 103.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 103.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 102.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 101.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 100.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 100.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 99.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 99.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 98.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 97.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 96.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 96.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 95.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 94.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 92.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 92.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 90.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 90.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 87.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 87.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 87.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 85.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 78.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 90.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 90.7
FF:10151-102I7 76 years, female 90.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 81.2
Pig sample Sample description nTPM
Amygdala
nTPM: 81.2
Samples: 4

Max nTPM: 127.8
Min nTPM: 63.9
Sample A Female 127.8
Sample B Female 65.4
Sample C Male 63.9
Sample D Male 67.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 190.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 190.7
Samples: 4

Max nTPM: 213.7
Min nTPM: 180.2
Sample A Male 183.6
Sample B Male 213.7
Sample C Female 185.2
Sample D Female 180.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
75198064 Antisense, RP_060502_01_F05, Mouse strain C57BL/6J (56 days, male) 2.1

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