MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:66.3 nTPM
HPA:66.3 nTPM
GTEx:68.2 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:20.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.1
2666 Male, age 74, left hemisphere 66.8
1870 Female, age 42, unknown 65.4
2828 Female, age 72, unknown 63.5
1830 Male, age 51, unknown 62.8
1833 Male, age 53, unknown 61.6
2019 Male, age 18, unknown 61.3
2219 Male, age 76, both hemispheres 60.3
2586 Male, age 75, left hemisphere 60.3
2411 Female, age 72, unknown 60.2
1827 Male, age 72, unknown 58.8
Dorsal raphe nucleus
nTPM: 61.6
2047 Male, age 72, unknown 63.1
1828 Male, age 53, unknown 62.2
2298 Female, age 72, unknown 61.9
2016 Female, age 72, unknown 61.1
2750 Male, age 76, both hemispheres 59.8
Inferior colliculus
nTPM: 63.2
1890 Male, age 53, unknown 72.9
2849 Male, age 72, unknown 60.8
1848 Female, age 42, unknown 59.6
2097 Female, age 72, unknown 59.4
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Pedunculopontine tegmental nucleus
nTPM: 66.3
2338 Male, age 61, both hemispheres 74.2
2334 Male, age 80, both hemispheres 64.9
1921 Female, age 85, both hemispheres 59.9
Periaquaductal grey, anterior
nTPM: 60.3
1947 Male, age 18, unknown 60.8
2502 Female, age 75, unknown 60.1
1795 Male, age 51, unknown 60.0
Periaquaductal grey, dorsal
nTPM: 61.6
2850 Male, age 76, both hemispheres 64.7
1831 Male, age 72, unknown 63.0
2464 Female, age 72, unknown 60.3
1840 Male, age 53, unknown 58.2
Periaquaductal grey, lateral
nTPM: 61.4
2140 Male, age 76, both hemispheres 62.1
2272 Male, age 74, both hemispheres 61.5
2053 Male, age 18, unknown 60.6
Pretectal area
nTPM: 59.8
1817 Female, age 42, unknown 61.9
2316 Male, age 76, right hemisphere 60.9
1944 Female, age 72, unknown 60.7
2224 Female, age 72, unknown 60.5
2825 Male, age 18, unknown 60.4
1815 Male, age 53, unknown 60.2
2667 Female, age 75, unknown 59.6
1816 Male, age 51, unknown 59.5
2007 Male, age 72, unknown 59.4
2273 Male, age 74, both hemispheres 57.6
2407 Male, age 75, both hemispheres 57.3
Red nucleus
nTPM: 64.8
2769 Male, age 72, unknown 68.3
2227 Male, age 72, unknown 67.6
2588 Male, age 74, left hemisphere 67.3
1865 Male, age 51, unknown 64.6
1904 Male, age 53, unknown 64.6
1954 Female, age 42, unknown 64.5
2823 Male, age 76, right hemisphere 64.4
2584 Male, age 75, left hemisphere 64.1
2503 Female, age 72, unknown 63.6
1821 Female, age 72, unknown 63.4
2725 Female, age 75, unknown 62.4
2785 Male, age 18, unknown 62.3
Substantia nigra
nTPM: 62.9
2665 Male, age 74, both hemispheres 72.1
2699 Male, age 18, unknown 64.9
1851 Male, age 51, unknown 63.8
2409 Female, age 72, unknown 63.8
2590 Female, age 75, unknown 63.0
1916 Female, age 42, unknown 61.0
2583 Male, age 75, right hemisphere 61.0
2241 Male, age 72, unknown 60.2
1889 Female, age 72, unknown 59.7
1941 Male, age 53, unknown 59.2
Superior colliculus
nTPM: 60.5
2087 Female, age 72, unknown 63.6
2587 Male, age 74, left hemisphere 62.6
2668 Female, age 75, unknown 61.9
1895 Male, age 76, right hemisphere 60.4
1995 Male, age 72, unknown 60.3
1913 Female, age 42, unknown 60.2
2261 Male, age 18, unknown 60.2
1796 Male, age 53, unknown 59.4
1839 Male, age 51, unknown 59.2
2664 Male, age 75, both hemispheres 57.7
Ventral tegmental area
nTPM: 64.1
1915 Female, age 42, unknown 66.9
2218 Male, age 76, both hemispheres 66.3
2021 Male, age 53, unknown 64.7
1942 Male, age 51, unknown 63.8
2410 Female, age 72, unknown 61.8
2223 Female, age 72, unknown 61.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.2
Samples: 139

Max nTPM: 1230.3
Min nTPM: 7.7
Std nTPM: 104.5
Median nTPM: 52.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1230.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 197.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 157.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 145.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 141.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 140.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 139.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 135.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 125.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 122.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 119.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.7
FF:10158-103A5 76 years, female 125.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 21.4
Min nTPM: 6.0
Sample A Female 21.4
Sample B Female 15.5
Sample C Male 19.5
Sample D Male 6.0
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 6.2
Min nTPM: 2.7
Sample B Female 6.2
Sample C Male 4.8
Sample D Male 2.7
Substantia nigra
nTPM: 62.7
Samples: 4

Max nTPM: 173.5
Min nTPM: 16.6
Sample A Female 36.5
Sample B Female 173.5
Sample C Male 16.6
Sample D Male 24.0
Superior colliculi
nTPM: 38.5
Samples: 4

Max nTPM: 60.0
Min nTPM: 18.0
Sample A Female 46.5
Sample B Female 60.0
Sample C Male 18.0
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 27.0
Min nTPM: 17.8
Sample A Male 27.0
Sample B Male 20.7
Sample C Female 17.9
Sample D Female 17.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69838564 Antisense, RP_050310_01_E04, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.