BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:27.5 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:55.8 nTPM
Allen mouse:5.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049918Antibody CAB075757
Glial cells Not detectedMedium
Neuronal cells HighMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.0
2481 Female, age 94, left hemisphere 42.7
2288 Male, age 75, left hemisphere 39.3
2289 Male, age 61, right hemisphere 39.2
1857 Female, age 85, left hemisphere 38.8
1781 Male, age 74, unknown 38.7
2846 Female, age 79, unknown 38.3
2290 Female, age 72, unknown 37.8
1854 Male, age 80, left hemisphere 37.1
Claustrum
nTPM: 38.4
1956 Male, age 74, unknown 40.7
2196 Female, age 79, unknown 40.5
2198 Male, age 80, both hemispheres 38.9
2292 Female, age 85, both hemispheres 38.7
2284 Female, age 91, both hemispheres 38.1
2392 Female, age 94, both hemispheres 37.6
2568 Male, age 61, both hemispheres 37.3
2491 Male, age 75, both hemispheres 37.0
2645 Female, age 72, unknown 36.9
Globus pallidus, externus
nTPM: 36.7
2772 Female, age 79, unknown 38.7
2646 Male, age 61, right hemisphere 37.9
2395 Male, age 75, both hemispheres 37.5
1996 Male, age 80, right hemisphere 37.2
2567 Female, age 72, unknown 32.3
Globus pallidus, internus
nTPM: 38.4
2287 Male, age 75, right hemisphere 41.8
2483 Female, age 94, right hemisphere 40.8
2778 Female, age 91, both hemispheres 39.8
2037 Male, age 80, right hemisphere 37.5
1818 Male, age 74, unknown 36.9
2111 Female, age 85, right hemisphere 35.9
2566 Female, age 72, unknown 35.9
Nucleus accumbens
nTPM: 39.1
2391 Female, age 94, left hemisphere 44.7
2698 Female, age 72, unknown 39.9
1856 Female, age 91, right hemisphere 39.4
2286 Male, age 75, left hemisphere 38.9
1783 Male, age 74, unknown 38.7
1806 Female, age 85, left hemisphere 37.4
2824 Male, age 61, right hemisphere 37.3
2732 Male, age 80, right hemisphere 36.7
Nucleus basalis of Meynert
nTPM: 37.2
2821 Male, age 75, both hemispheres 38.3
2484 Female, age 94, left hemisphere 37.8
2569 Male, age 61, both hemispheres 36.7
2393 Male, age 80, right hemisphere 35.8
Nucleus of the diagonal band
nTPM: 39.1
2195 Female, age 85, both hemispheres 40.6
1812 Female, age 91, both hemispheres 40.0
2775 Male, age 80, right hemisphere 40.0
1979 Male, age 74, unknown 39.1
2029 Male, age 61, right hemisphere 36.0
Olfactory tubercle
nTPM: 39.3
1846 Male, age 80, right hemisphere 40.6
1998 Female, age 91, both hemispheres 39.7
2856 Male, age 75, right hemisphere 38.7
2487 Female, age 94, left hemisphere 38.0
Putamen
nTPM: 37.0
2482 Female, age 94, left hemisphere 41.4
1829 Male, age 74, unknown 37.2
1937 Female, age 91, right hemisphere 37.2
2466 Female, age 79, unknown 36.9
1838 Male, age 80, right hemisphere 36.8
2489 Female, age 72, unknown 35.0
2647 Male, age 75, left hemisphere 34.8
Septal nuclei
nTPM: 39.7
2031 Female, age 72, unknown 42.8
2629 Female, age 94, right hemisphere 42.3
1960 Male, age 74, unknown 41.6
2009 Female, age 91, both hemispheres 39.3
2059 Female, age 85, both hemispheres 38.0
2199 Male, age 80, right hemisphere 37.8
2394 Male, age 61, left hemisphere 35.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.4
Samples: 246

Max nTPM: 40.8
Min nTPM: 13.1
Std nTPM: 4.7
Median nTPM: 23.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 40.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 40.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 36.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 34.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 34.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 34.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 32.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 32.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 31.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 31.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 31.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.5
Samples: 246

Max nTPM: 51.5
Min nTPM: 3.4
Std nTPM: 7.3
Median nTPM: 27.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 51.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 48.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 48.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 47.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 45.0
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 42.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 42.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 39.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 39.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 39.2
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 39.2
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Brain - Putamen (basal ganglia)
Average nTPM: 23.6
Samples: 205

Max nTPM: 48.8
Min nTPM: 10.8
Std nTPM: 5.9
Median nTPM: 23.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 48.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 45.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 43.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 40.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 37.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 36.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 36.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 35.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 34.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 34.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 34.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.6
FF:10164-103B2 76 years, female 35.6
Globus pallidus
Scaled Tags Per Million: 45.7
FF:10175-103C4 60 years, female 52.8
FF:10161-103A8 76 years, female 38.6
Nucleus accumbens
Scaled Tags Per Million: 23.2
FF:10037-101F1 23-56 years, mixed 23.2
Putamen
Scaled Tags Per Million: 28.4
FF:10176-103C5 60 years, female 28.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Caudate
nTPM: 27.9
Samples: 4

Max nTPM: 30.9
Min nTPM: 25.8
Sample A Female 25.8
Sample B Female 27.9
Sample C Male 30.9
Sample D Male 26.8
Putamen
nTPM: 30.3
Samples: 4

Max nTPM: 34.5
Min nTPM: 26.9
Sample A Female 26.9
Sample B Female 28.5
Sample C Male 34.5
Sample D Male 31.3
Septum
nTPM: 28.3
Samples: 4

Max nTPM: 31.9
Min nTPM: 26.2
Sample A Female 31.9
Sample B Female 28.4
Sample C Male 26.2
Sample D Male 26.5
Ventral pallidum
nTPM: 27.6
Samples: 4

Max nTPM: 28.9
Min nTPM: 24.0
Sample A Female 28.8
Sample B Female 28.8
Sample C Male 24.0
Sample D Male 28.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 44.8
Samples: 4

Max nTPM: 46.7
Min nTPM: 42.4
Sample A Male 44.8
Sample B Male 46.7
Sample C Female 45.2
Sample D Female 42.4
Septum
nTPM: 55.7
Samples: 4

Max nTPM: 59.9
Min nTPM: 52.2
Sample A Male 59.9
Sample B Male 56.5
Sample C Female 54.3
Sample D Female 52.2
Ventral forebrain
nTPM: 53.4
Samples: 4

Max nTPM: 55.8
Min nTPM: 48.4
Sample A Male 54.4
Sample B Male 55.8
Sample C Female 48.4
Sample D Female 55.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.1
68193039 Antisense, RP_040825_02_A04, Mouse strain C57BL/6J (56 days, male) 5.1
Pallidum
Expression energy: 5.1
68193039 Antisense, RP_040825_02_A04, Mouse strain C57BL/6J (56 days, male) 5.1

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